RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 HYKKA2RU49 373 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 DGAT1O75907 488 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 TOXO94900 526 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 SLC34A2O95436 690 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 PSAPP07602 524 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 G6PDP11413 515 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 RAC2P15153 192 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 TMEM11P17152 192 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 GABRB1P18505 474 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 CLDN10P78369 228 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 MXD1Q05195 221 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 MAP4K2Q12851 820 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 ZNF460Q14592 562 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 P2RY14Q15391 338 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 SYTL3Q4VX76 610 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 CNIH2Q6PI25 160 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 FAM217AQ8IXS0 508 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 KAT2AQ92830 837 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 POP5Q969H6 163 aaKnown RBP13.23□□□□□ -0.29
SHMT2-226ENST00000556825 FCRL1Q96LA6 429 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 PPM1MQ96MI6 270 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 MYOCQ99972 504 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 TINF2Q9BSI4 451 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 TCF7L1Q9HCS4 588 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 IMP3Q9NV31 184 aaKnown RBP13.23□□□□□ -0.29
SHMT2-226ENST00000556825 AKAP7Q9P0M2 348 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-226ENST00000556825 CPA4Q9UI42 421 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 IKZF3Q9UKT9 509 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 CA5BQ9Y2D0 317 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 PTGDR2Q9Y5Y4 395 aa13.23□□□□□ -0.29
SHMT2-226ENST00000556825 SLX4Q8IY92 1834 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 PLSCR5A0PG75 271 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 H7C0S8 307 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 PSMD10O75832 226 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 FGF4P08620 206 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 G0S2P27469 103 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 ETV5P41161 510 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 CRHR2Q13324 411 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 SV2CQ496J9 727 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 SEZ6L2Q6UXD5 910 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 OTOP2Q7RTS6 562 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 ANKRD46Q86W74 232 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 CEP97Q8IW35 865 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 SERPINA12Q8IW75 414 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 GPD1LQ8N335 351 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 C1orf52Q8N6N3 182 aaKnown RBP13.22□□□□□ -0.29
SHMT2-226ENST00000556825 POMGNT2Q8NAT1 580 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 ZNF548Q8NEK5 533 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-226ENST00000556825 TRMT10AQ8TBZ6 339 aaKnown RBP13.22□□□□□ -0.29
SHMT2-226ENST00000556825 TWIST2Q8WVJ9 160 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 TCTEX1D2Q8WW35 142 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 AP3S1Q92572 193 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 CNOT9Q92600 299 aaKnown RBP13.22□□□□□ -0.29
SHMT2-226ENST00000556825 MASTLQ96GX5 879 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 HHIPQ96QV1 700 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 COA1Q9GZY4 146 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 ENKD1Q9H0I2 346 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 METTL9Q9H1A3 318 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 PRMT7Q9NVM4 692 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-226ENST00000556825 TAS2R16Q9NYV7 291 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 DHCR7Q9UBM7 475 aaKnown RBP13.22□□□□□ -0.29
SHMT2-226ENST00000556825 FBXL21Q9UKT6 434 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 ARID2Q68CP9 1835 aa13.22□□□□□ -0.29
SHMT2-226ENST00000556825 M0QYV0 167 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 ARVCFO00192 962 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 GPR31O00270 319 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 CXCR6O00574 342 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 AKR7A3O95154 331 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 STBD1O95210 358 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 SIX3O95343 332 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-226ENST00000556825 SYPP08247 313 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 HCKP08631 526 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 NR2C1P13056 603 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 NFKB1P19838 968 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 DNAJA1P31689 397 aaKnown RBP13.21□□□□□ -0.29
SHMT2-226ENST00000556825 UFM1P61960 85 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 IL18Q14116 193 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 HLXQ14774 488 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-226ENST00000556825 GRIN2CQ14957 1233 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 UGT8Q16880 541 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 TECRLQ5HYJ1 363 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 SFRP5Q5T4F7 317 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 RPL13AP3Q6NVV1 102 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 THEM5Q8N1Q8 247 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 OR8J3Q8NGG0 315 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 OR5M9Q8NGP3 310 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 STK35Q8TDR2 534 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 HTR3CQ8WXA8 447 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 TCEAL4Q96EI5 215 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 ELMOD3Q96FG2 381 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 KIF12Q96FN5 646 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 EDEM2Q9BV94 578 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 GGACTQ9BVM4 153 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 TMPRSS5Q9H3S3 457 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 RIMS4Q9H426 269 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-226ENST00000556825 AIG1Q9NVV5 245 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 PDP1Q9P0J1 537 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-226ENST00000556825 MBD1Q9UIS9 605 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-226ENST00000556825 TRPV2Q9Y5S1 764 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 TNS1Q9HBL0 1735 aaKnown RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms