RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 SNX6Q9UNH7 406 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 NTNG1Q9Y2I2 539 aa12.82□□□□□ -0.36
SHMT2-219ENST00000555563 TRBV11-1A0A0K0K1C0 115 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 SYNDIG1LA6NDD5 238 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 OR5H15A6NDH6 313 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 MANBAO00462 879 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 IFNA16P05015 189 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 FAM58BPP0C7Q3 252 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 NR2F6P10588 404 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 UQCRFS1P47985 274 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 ST13P50502 369 aaKnown RBP12.81□□□□□ -0.36
SHMT2-219ENST00000555563 SERTAD2Q14140 314 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 CYP20A1Q6UW02 462 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 TRABD2AQ86V40 505 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 SRRM1Q8IYB3 904 aaKnown RBP12.81□□□□□ -0.36
SHMT2-219ENST00000555563 LGI4Q8N135 537 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 CCDC63Q8NA47 563 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 MYRIPQ8NFW9 859 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 OR1N1Q8NGS0 311 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 RDH11Q8TC12 318 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 NCLNQ969V3 563 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 APOPT1Q96IL0 206 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 ALOXE3Q9BYJ1 711 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 SLC29A3Q9BZD2 475 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.81□□□□□ -0.36
SHMT2-219ENST00000555563 RPF2Q9H7B2 306 aaKnown RBP12.81□□□□□ -0.36
SHMT2-219ENST00000555563 MKS1Q9NXB0 559 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 MS4A12Q9NXJ0 267 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 ANKRD10Q9NXR5 420 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 ABI3Q9P2A4 366 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 ZNF223Q9UK11 482 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-219ENST00000555563 RAB21Q9UL25 225 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 PPIEQ9UNP9 301 aaKnown RBP12.81□□□□□ -0.36
SHMT2-219ENST00000555563 SLC12A4Q9UP95 1085 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 STK38LQ9Y2H1 464 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 ASB4Q9Y574 426 aa12.81□□□□□ -0.36
SHMT2-219ENST00000555563 COL12A1Q99715 3063 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 TRAV17A0A0B4J275 112 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 A0A1W2PR48 441 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 GABRR3A8MPY1 467 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 UBFD1O14562 309 aaKnown RBP12.8□□□□□ -0.36
SHMT2-219ENST00000555563 PROM1O43490 865 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 VPS4BO75351 444 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 AIFM1O95831 613 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 ENO1P06733 434 aaKnown RBP12.8□□□□□ -0.36
SHMT2-219ENST00000555563 GNLYP22749 145 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 TPP2P29144 1249 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-219ENST00000555563 BUD31P41223 144 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-219ENST00000555563 HTR6P50406 440 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 CLCN2P51788 898 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 PKNOX1P55347 436 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 IGLV3-21P80748 117 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-219ENST00000555563 SRSF1Q07955 248 aaKnown RBP eCLIP12.8□□□□□ -0.36
SHMT2-219ENST00000555563 GALNT1Q10472 559 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-219ENST00000555563 COMMD6Q7Z4G1 85 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 OR4N5Q8IXE1 308 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 GALNT11Q8NCW6 608 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 AGAP11Q8TF27 550 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 VMP1Q96GC9 406 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 KCNA7Q96RP8 456 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 CDCP1Q9H5V8 836 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 BRF2Q9HAW0 419 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 VTI1BQ9UEU0 232 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 ADAM29Q9UKF5 820 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 VPS4AQ9UN37 437 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 MAST4O15021 2626 aa12.8□□□□□ -0.36
SHMT2-219ENST00000555563 GLOD5A6NK44 160 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 TCP11X1B4DZS4 312 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 PRAMEF2O60811 474 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 ESRRBO95718 433 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 KRT6AP02538 564 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 KRT6BP04259 564 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 KLK1P06870 262 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 CPA3P15088 417 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 CHN1P15882 459 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 HMOX2P30519 316 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 TLX1P31314 330 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 KRT6CP48668 564 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 GPR143P51810 404 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 NAGLUP54802 743 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 MLF1P58340 268 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 DNAJB13P59910 316 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 FOLH1Q04609 750 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 TBL3Q12788 808 aaKnown RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 CSTF3Q12996 717 aaKnown RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 TUBA3CQ13748 450 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 PCLAFQ15004 111 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 TUBA3EQ6PEY2 450 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 FRMD7Q6ZUT3 714 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 RPS19BP1Q86WX3 136 aaKnown RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 METTL4Q8N3J2 472 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 TMEM132CQ8N3T6 1108 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 BANPQ8N9N5 519 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 MDS2Q8NDY4 140 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 OR14A16Q8NHC5 309 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 METTL6Q8TCB7 284 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 GRHL3Q8TE85 626 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 THAP3Q8WTV1 239 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 PTPMT1Q8WUK0 201 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 DAZLQ92904 295 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms