RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 CDC20Q12834 499 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 SQLEQ14534 574 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 GSTA3Q16772 222 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 MINDY4Q4G0A6 757 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 ATP6AP1LQ52LC2 224 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 CRTC2Q53ET0 693 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-218ENST00000555213 SPIN4Q56A73 249 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 OR4C11Q6IEV9 310 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 CYP20A1Q6UW02 462 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 ZC3H7AQ8IWR0 971 aaKnown RBP10.29□□□□□ -0.76
SHMT2-218ENST00000555213 PRSS58Q8IYP2 241 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 ZCCHC7Q8N3Z6 543 aaKnown RBP10.29□□□□□ -0.76
SHMT2-218ENST00000555213 ACOT4Q8N9L9 421 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 OR5T3Q8NGG3 340 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 OR9I1Q8NGQ6 314 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 RP9Q8TA86 221 aaKnown RBP10.29□□□□□ -0.76
SHMT2-218ENST00000555213 UTP4Q969X6 686 aaKnown RBP10.29□□□□□ -0.76
SHMT2-218ENST00000555213 TBC1D20Q96BZ9 403 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 PEX11GQ96HA9 241 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 SMIM10Q96HG1 83 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 PPP3R2Q96LZ3 170 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 IP6K3Q96PC2 410 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 C1orf50Q9BV19 199 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 SOX17Q9H6I2 414 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-218ENST00000555213 LRTM1Q9HBL6 345 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 LYRM4Q9HD34 91 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 SEMA3GQ9NS98 782 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 RIC8BQ9NVN3 520 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 C1orf109Q9NX04 203 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 LYARQ9NX58 379 aaKnown RBP10.29□□□□□ -0.76
SHMT2-218ENST00000555213 SIRT5Q9NXA8 310 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 MS4A12Q9NXJ0 267 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 VPS29Q9UBQ0 182 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 PHF11Q9UIL8 331 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 C3orf18Q9UK00 162 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 ADAM29Q9UKF5 820 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 DLGAP4Q9Y2H0 992 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 SSUH2Q9Y2M2 353 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 CAPN7Q9Y6W3 813 aa10.29□□□□□ -0.76
SHMT2-218ENST00000555213 ANKRD11Q6UB99 2663 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-218ENST00000555213 SPTBP11277 2137 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 BLACEA4D250 179 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 CDC14CA4D256 554 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 SYNDIG1LA6NDD5 238 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 B2RBV5 119 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 C4orf51C9J302 202 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 RTCAO00442 366 aaKnown RBP10.28□□□□□ -0.76
SHMT2-218ENST00000555213 PEX12O00623 359 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 CLDN4O14493 209 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 GUCY1B2O75343 617 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 SEC22BO75396 215 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 KLF7O75840 302 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-218ENST00000555213 B3GALT4O96024 378 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 HEXBP07686 556 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 FHP07954 510 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 PRKAR1AP10644 381 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 ESRRAP11474 423 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-218ENST00000555213 BCKDHAP12694 445 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 CALB2P22676 271 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 TACR1P25103 407 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 ITPKBP27987 946 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 TLX1P31314 330 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-218ENST00000555213 OTX2P32243 289 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 CPA2P48052 419 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 NME5P56597 212 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 RAB38P57729 211 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 CXADRP78310 365 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 KLC1Q07866 573 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 ACSM2AQ08AH3 577 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 SRSF6Q13247 344 aaKnown RBP10.28□□□□□ -0.76
SHMT2-218ENST00000555213 SSPNQ14714 243 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 NR6A1Q15406 480 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 UGT8Q16880 541 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 SYT16Q17RD7 645 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 PDCD4Q53EL6 469 aaKnown RBP10.28□□□□□ -0.76
SHMT2-218ENST00000555213 AGKQ53H12 422 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 ACSM2BQ68CK6 577 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 BLOC1S3Q6QNY0 202 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 RIPOR1Q6ZS17 1223 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 GK5Q6ZS86 529 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 SHISA6Q6ZSJ9 500 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 COMMD6Q7Z4G1 85 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 UBE3DQ7Z6J8 389 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 CA13Q8N1Q1 262 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 EFCAB3Q8N7B9 438 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.28□□□□□ -0.76
SHMT2-218ENST00000555213 METTL21AQ8WXB1 218 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 THAP4Q8WY91 577 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 NACC2Q96BF6 587 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 SPSB2Q99619 263 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 ZNF717Q9BY31 904 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-218ENST00000555213 MRPL1Q9BYD6 325 aaKnown RBP10.28□□□□□ -0.76
SHMT2-218ENST00000555213 RBCK1Q9BYM8 510 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 WDR41Q9HAD4 459 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 PRDM7Q9NQW5 492 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 MAP10Q9P2G4 905 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 C19orf25Q9UFG5 118 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-218ENST00000555213 BAIAP2L1Q9UHR4 511 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 MKL2Q9ULH7 1088 aa10.28□□□□□ -0.76
SHMT2-218ENST00000555213 POLHQ9Y253 713 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms