RNA–Protein interactions for RNA: ENST00000548938.5

HDAC7-228, Transcript of histone deacetylase 7, humanhuman

TSL 5

Gene HDAC7, Length 2,719 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-228ENST00000548938 H0YIV9 168 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 LRRTM2O43300 516 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 ICMTO60725 284 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 SOCS5O75159 536 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 HMGA1P17096 107 aaKnown RBP13.09□□□□□ -0.31
HDAC7-228ENST00000548938 RHCEP18577 417 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 CA8P35219 290 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 SLC11A1P49279 550 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 LIM2P55344 173 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 CCL23P55773 120 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 RPS13P62277 151 aaKnown RBP13.09□□□□□ -0.31
HDAC7-228ENST00000548938 SNRPGP62308 76 aaKnown RBP13.09□□□□□ -0.31
HDAC7-228ENST00000548938 RBBP4Q09028 425 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 FAPQ12884 760 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 CCSMST1Q4G0I0 132 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 CRB2Q5IJ48 1285 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 GRHL2Q6ISB3 625 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 TMIGD1Q6UXZ0 262 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 ABI3BPQ7Z7G0 1075 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 NANOGP1Q8N7R0 232 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 OR7G3Q8NG95 312 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 MED30Q96HR3 178 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 MSLNLQ96KJ4 702 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 TSSK6Q9BXA6 273 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 TMEM38AQ9H6F2 299 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 BRD9Q9H8M2 597 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 MYL12BO14950 172 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 IFNW1P05000 195 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 CHI3L1P36222 383 aaPredicted RBP13.09□□□□□ -0.31
HDAC7-228ENST00000548938 PCBP3P57721 371 aaKnown RBP13.09□□□□□ -0.31
HDAC7-228ENST00000548938 PTSQ03393 145 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 ZNF33BQ06732 778 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 MLLT11Q13015 90 aaPredicted RBP13.09□□□□□ -0.31
HDAC7-228ENST00000548938 ELOAQ14241 798 aaKnown RBP13.09□□□□□ -0.31
HDAC7-228ENST00000548938 SEC23BQ15437 767 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 MPEG1Q2M385 716 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 MEDAGQ5VYS4 303 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 CRIPAKQ8N1N5 446 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 OXR1Q8N573 874 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 CELF5Q8N6W0 485 aaKnown RBP13.09□□□□□ -0.31
HDAC7-228ENST00000548938 GDPD1Q8N9F7 314 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 SYT14Q8NB59 555 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 SUN5Q8TC36 379 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 SNAPC3Q92966 411 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 WRAP53Q9BUR4 548 aaKnown RBP13.09□□□□□ -0.31
HDAC7-228ENST00000548938 GON7Q9BXV9 100 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 BHLHE41Q9C0J9 482 aaPredicted RBP13.09□□□□□ -0.31
HDAC7-228ENST00000548938 TOR4AQ9NXH8 423 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 TRPM5Q9NZQ8 1165 aa13.09□□□□□ -0.31
HDAC7-228ENST00000548938 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 ARRDC5A6NEK1 342 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 H3BN98 237 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 POLR1CO15160 346 aaPredicted RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 SLC16A5O15375 505 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 SEC14L5O43304 696 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 ZNF821O75541 412 aaPredicted RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 CCL5P13501 91 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 SERPINA4P29622 427 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 SOAT1P35610 550 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 OPRD1P41143 372 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 SMAD3P84022 425 aaKnown RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 C19orf57Q0VDD7 668 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 PLD1Q13393 1074 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 PUM1Q14671 1186 aaKnown RBP eCLIP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 TATDN3Q17R31 274 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 RETSATQ6NUM9 610 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 PEX5LQ8IYB4 626 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 TCTE3Q8IZS6 198 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 TCEANCQ8N8B7 351 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 ATP6V1C2Q8NEY4 427 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 GOT1L1Q8NHS2 421 aaPredicted RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 CLP1Q92989 425 aaKnown RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 NELL2Q99435 816 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 C2orf49Q9BVC5 232 aaPredicted RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 UCK2Q9BZX2 261 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 MCOLN1Q9GZU1 580 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 TMEM245Q9H330 911 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 REEP4Q9H6H4 257 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 BRF2Q9HAW0 419 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 RC3H2Q9HBD1 1191 aaKnown RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 TMEM39AQ9NV64 488 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 NDRG2Q9UN36 371 aaKnown RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 MAPRE3Q9UPY8 281 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 TMEM202A6NGA9 273 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 IL1AP01583 271 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 OSMP13725 252 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 HSD3B1P14060 373 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 ATP1B2P14415 290 aaPredicted RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 HSD3B2P26439 372 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 ERP29P30040 261 aaKnown RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 SNRPD2P62316 118 aaKnown RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 NCF4Q15080 339 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 GPR19Q15760 415 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 ZNF630Q2M218 657 aaPredicted RBP13.08□□□□□ -0.32
HDAC7-228ENST00000548938 FLYWCH1Q4VC44 716 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 SPIN4Q56A73 249 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 TMEM201Q5SNT2 666 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 PLEKHS1Q5SXH7 462 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 TRIM40Q6P9F5 258 aa13.08□□□□□ -0.32
HDAC7-228ENST00000548938 TPRG1Q6ZUI0 275 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms