RNA–Protein interactions for RNA: ENST00000546080.5

SRP54-202, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 2,187 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-202ENST00000546080 SAMD11Q96NU1 681 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 PKP4Q99569 1192 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 GPR62Q9BZJ7 368 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 REV1Q9UBZ9 1251 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 NDOR1Q9UHB4 597 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 CLCA3PQ9Y6N3 262 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 TRAV19A0A0A6YYK7 116 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 FAM240BA0A1B0GVZ2 78 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 NPIPB15A6NHN6 443 aaPredicted RBP13.55□□□□□ -0.24
SRP54-202ENST00000546080 H0YIV9 168 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 DUSP11O75319 330 aaKnown RBP13.55□□□□□ -0.24
SRP54-202ENST00000546080 CPEP16870 476 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 APEX1P27695 318 aaKnown RBP13.55□□□□□ -0.24
SRP54-202ENST00000546080 UQCRC1P31930 480 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 SOAT1P35610 550 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 XKP51811 444 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 PPP3R1P63098 170 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 MRPL28Q13084 256 aaKnown RBP13.55□□□□□ -0.24
SRP54-202ENST00000546080 MAB21L1Q13394 359 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 HEPACAMQ14CZ8 416 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 WSCD2Q2TBF2 565 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 ESCO2Q56NI9 601 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 Q8N402 240 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 OR8J1Q8NGP2 316 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 CLP1Q92989 425 aaKnown RBP13.55□□□□□ -0.24
SRP54-202ENST00000546080 WBP2Q969T9 261 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 MED8Q96G25 268 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 TRAF4Q9BUZ4 470 aaPredicted RBP13.55□□□□□ -0.24
SRP54-202ENST00000546080 TMEM121BQ9BXQ6 578 aaPredicted RBP13.55□□□□□ -0.24
SRP54-202ENST00000546080 REEP4Q9H6H4 257 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 NLKQ9UBE8 527 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 ATP6V1HQ9UI12 483 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 KCND3Q9UK17 655 aa13.55□□□□□ -0.24
SRP54-202ENST00000546080 SPIN1Q9Y657 262 aaPredicted RBP13.55□□□□□ -0.24
SRP54-202ENST00000546080 ZNF840PA6NDX5 716 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 SMLR1H3BR10 107 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 SMAD6O43541 496 aaKnown RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 OR10H3O60404 316 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 SOCS5O75159 536 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 RAB36O95755 333 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 HLA-DQB1P01920 261 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 ARAFP10398 606 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 MYL12AP19105 171 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 AP2S1P53680 142 aaPredicted RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 PTPN5P54829 565 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 PCBP3P57721 371 aaKnown RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 RRAS2P62070 204 aaPredicted RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 KCNC3Q14003 757 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 ZNF628Q5EBL2 1059 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 ATAT1Q5SQI0 421 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 PLEKHS1Q5SXH7 462 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 MFSD14CQ5VZR4 134 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 USP50Q70EL3 339 aaPredicted RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 AMIGO1Q86WK6 493 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 DUSP18Q8NEJ0 188 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 CIDECQ96AQ7 238 aaPredicted RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 MED18Q9BUE0 208 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 RC3H2Q9HBD1 1191 aaKnown RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 MCUBQ9NWR8 336 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 COMMD3Q9UBI1 195 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 MALT1Q9UDY8 824 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 MOSPD1Q9UJG1 213 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 HCN2Q9UL51 889 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 MGAT4BQ9UQ53 548 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 EXO1Q9UQ84 846 aaKnown RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 PCDHB7Q9Y5E2 793 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 SCN10AQ9Y5Y9 1956 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 LYRM1O43325 122 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 EOMESO95936 686 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 LIM2P55344 173 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 CLDN20P56880 219 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 ZNF763Q0D2J5 394 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 CDH18Q13634 790 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 ARHGEF6Q15052 776 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 SLC5A12Q1EHB4 618 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 CRTC1Q6UUV9 634 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 TMIGD1Q6UXZ0 262 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 ZNF730Q6ZMV8 503 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 WDR53Q7Z5U6 358 aaPredicted RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 PDZD3Q86UT5 571 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 LAPTM4BQ86VI4 370 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 TMC8Q8IU68 726 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.54□□□□□ -0.24
SRP54-202ENST00000546080 DCAF4L2Q8NA75 395 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 OR52I1Q8NGK6 324 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 HUS1BQ8NHY5 278 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 UPRTQ96BW1 309 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 C1GALT1C1Q96EU7 318 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 ZBED6CLQ96FA7 236 aaPredicted RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 PTPN18Q99952 460 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 WRAP53Q9BUR4 548 aaKnown RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 KATNB1Q9BVA0 655 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 BRD9Q9H8M2 597 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 GULP1Q9UBP9 304 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 KCNN3Q9UGI6 736 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 MBD1Q9UIS9 605 aaPredicted RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 DIMT1Q9UNQ2 313 aaKnown RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 PRELID1Q9Y255 219 aa13.54□□□□□ -0.24
SRP54-202ENST00000546080 YARS2Q9Y2Z4 477 aaKnown RBP13.54□□□□□ -0.24
SRP54-202ENST00000546080 SPEF1Q9Y4P9 236 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms