RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ZNF321PQ8N8H1 164 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 SNX31Q8N9S9 440 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 PSD4Q8NDX1 1056 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 EPS8L3Q8TE67 593 aaKnown RBP7.86□□□□□ -1.15
USP28-215ENST00000545608 CA5BP1Q8WTZ4 195 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 PTPMT1Q8WUK0 201 aaPredicted RBP7.86□□□□□ -1.15
USP28-215ENST00000545608 WDR34Q96EX3 536 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 C14orf79Q96F83 325 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 SEC16BQ96JE7 1060 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 F2RL3Q96RI0 385 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 SERINC2Q96SA4 455 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 KRT12Q99456 494 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 CCDC77Q9BR77 488 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 ALOXE3Q9BYJ1 711 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 PITHD1Q9GZP4 211 aaPredicted RBP7.86□□□□□ -1.15
USP28-215ENST00000545608 EHD1Q9H4M9 534 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 ADAP2Q9NPF8 381 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 NSMCE4AQ9NXX6 385 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 WWOXQ9NZC7 414 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 MYOTQ9UBF9 498 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 ERVK-11Q9UQG0 969 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 SAR1BQ9Y6B6 198 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 CRYBG3Q68DQ2 2970 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 A0A088AWK7 358 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 A0A0G2JMM0 328 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 A0A1W2PPB8 328 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 A0A1W2PRS3 328 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 A8MVJ9 347 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 KIR3DP1A8MWS1 328 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 CCDC188H7C350 402 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 WWP2O00308 870 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 RTCAO00442 366 aaKnown RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 FANCGO15287 622 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 ZNF354AO60765 605 aaPredicted RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 LDB3O75112 727 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 STK16O75716 305 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 C1QAP02745 245 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 TUBB4AP04350 444 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 ZNF10P21506 573 aaPredicted RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 SOX3P41225 446 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 HK2P52789 917 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 CHIT1Q13231 466 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 ELAVL1Q15717 326 aaKnown RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 CDKL4Q5MAI5 379 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 MEX3BQ6ZN04 569 aaKnown RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 ZNF793Q6ZN11 406 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 GALNT12Q8IXK2 581 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 EID3Q8N140 333 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 OR2M7Q8NG81 312 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 ZNF473Q8WTR7 871 aaKnown RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 PYROXD1Q8WU10 500 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 ASB15Q8WXK1 588 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 PTCD3Q96EY7 689 aaKnown RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 RASL10BQ96S79 203 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 GPR22Q99680 433 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 RBBP8Q99708 897 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 NAPGQ99747 312 aaPredicted RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 MAPKAP1Q9BPZ7 522 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 TREX2Q9BQ50 279 aaPredicted RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 UCK2Q9BZX2 261 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 DPH5Q9H2P9 285 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 COPS7BQ9H9Q2 264 aaPredicted RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 NPHS2Q9NP85 383 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 SAYSD1Q9NPB0 183 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 HPF1Q9NWY4 346 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 COQ3Q9NZJ6 369 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 CD274Q9NZQ7 290 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 PTBP2Q9UKA9 531 aaKnown RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 RNF6Q9Y252 685 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 MRPS33Q9Y291 106 aaKnown RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 CLCA3PQ9Y6N3 262 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 TEP1Q99973 2627 aaKnown RBP7.85□□□□□ -1.15
USP28-215ENST00000545608 CSMD1Q96PZ7 3565 aa7.85□□□□□ -1.15
USP28-215ENST00000545608 TCRBV9S1A1TA0A576 114 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 NKX2-6A6NCS4 301 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 FAM159BA6NKW6 160 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 FAM166BA8MTA8 275 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 NPIPA2E9PIF3 369 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 NPIPA3F8WFD2 350 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 G3V3Y1 287 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 CCNT2O60583 730 aaKnown RBP7.84□□□□□ -1.15
USP28-215ENST00000545608 SH3BGRLO75368 114 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 FAM155BO75949 473 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 ETHE1O95571 254 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 TGFB1P01137 390 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 STMN1P16949 149 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 TNNI3P19429 210 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 CNR1P21554 472 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 ATP5A1P25705 553 aaKnown RBP7.84□□□□□ -1.15
USP28-215ENST00000545608 GP5P40197 560 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 PAFAH1B1P43034 410 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 MSH2P43246 934 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 GPX6P59796 221 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 ATP6V0D1P61421 351 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 PPIAP62937 165 aaKnown RBP7.84□□□□□ -1.15
USP28-215ENST00000545608 RNF4P78317 190 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 PLGLB1Q02325 96 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 ID2Q02363 134 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 IRF8Q02556 426 aa7.84□□□□□ -1.15
USP28-215ENST00000545608 TLE4Q04727 773 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms