RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PQBP1O60828 265 aaKnown RBP13.08□□□□□ -0.31
VPS33A-208ENST00000543633 MTX2O75431 263 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 RPS19P39019 145 aaKnown RBP13.08□□□□□ -0.31
VPS33A-208ENST00000543633 TBPL1P62380 186 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 SCN1BQ07699 218 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 SLBPQ14493 270 aaKnown RBP eCLIP13.08□□□□□ -0.31
VPS33A-208ENST00000543633 ZNF79Q15937 498 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 ADNP2Q6IQ32 1131 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 KIAA1211LQ6NV74 962 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 OTOP2Q7RTS6 562 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 NRARPQ7Z6K4 114 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 GDPD1Q8N9F7 314 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 ASCC1Q8N9N2 400 aaKnown RBP13.08□□□□□ -0.31
VPS33A-208ENST00000543633 RASSF5Q8WWW0 418 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 ST6GAL2Q96JF0 529 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 MSLNLQ96KJ4 702 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 MED18Q9BUE0 208 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 CNPPD1Q9BV87 410 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 SLC22A4Q9H015 551 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 ITM2CQ9NQX7 267 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 C14orf119Q9NWQ9 140 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 ACSL6Q9UKU0 697 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 RAB23Q9ULC3 237 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 MAP4K5Q9Y4K4 846 aa13.08□□□□□ -0.31
VPS33A-208ENST00000543633 DOCK6Q96HP0 2047 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 TET1Q8NFU7 2136 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 PIPSLA2A3N6 862 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 OR2AG2A6NM03 316 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 CENPXA8MT69 81 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 CKMP06732 381 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 IL7P13232 177 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 HLA-FP30511 346 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 RFX2P48378 723 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 ATN1P54259 1190 aaPredicted RBP13.08□□□□□ -0.32
VPS33A-208ENST00000543633 WDR5P61964 334 aaKnown RBP13.08□□□□□ -0.32
VPS33A-208ENST00000543633 ZNF91Q05481 1191 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 CDK10Q15131 360 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 NDUFA9Q16795 377 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 TCTN1Q2MV58 587 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 C1orf53Q5VUE5 145 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 XKRXQ6PP77 449 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 CASP12Q6UXS9 341 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 LINC00471Q8N535 108 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 SCAMP4Q969E2 229 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 GLYATL1Q969I3 302 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 CIDECQ96AQ7 238 aaPredicted RBP13.08□□□□□ -0.32
VPS33A-208ENST00000543633 NEURL3Q96EH8 262 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 PHOX2BQ99453 314 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 MCOLN1Q9GZU1 580 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 EXOSC4Q9NPD3 245 aaKnown RBP13.08□□□□□ -0.32
VPS33A-208ENST00000543633 ISYNA1Q9NPH2 558 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 ACAD8Q9UKU7 415 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 SLC6A14Q9UN76 642 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 DIMT1Q9UNQ2 313 aaKnown RBP13.08□□□□□ -0.32
VPS33A-208ENST00000543633 NOX1Q9Y5S8 564 aa13.08□□□□□ -0.32
VPS33A-208ENST00000543633 TRAV19A0A0A6YYK7 116 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 IRGMA1A4Y4 181 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 TMEM202A6NGA9 273 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 SSX4O60224 188 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 SEMA3DO95025 777 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 C1orf105O95561 183 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 URODP06132 367 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 POU2F1P14859 743 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 SOAT1P35610 550 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 GANABQ14697 944 aaKnown RBP13.07□□□□□ -0.32
VPS33A-208ENST00000543633 LARS2Q15031 903 aaKnown RBP13.07□□□□□ -0.32
VPS33A-208ENST00000543633 CLPPQ16740 277 aaPredicted RBP13.07□□□□□ -0.32
VPS33A-208ENST00000543633 GLYR1Q49A26 553 aaPredicted RBP13.07□□□□□ -0.32
VPS33A-208ENST00000543633 CCSMST1Q4G0I0 132 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 ZNF658BQ4V348 819 aaPredicted RBP13.07□□□□□ -0.32
VPS33A-208ENST00000543633 SAXO2Q658L1 398 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 CD300LDQ6UXZ3 194 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 HSDL2Q6YN16 418 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 RASGEF1AQ8N9B8 481 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 Q8N9G6 341 aaPredicted RBP13.07□□□□□ -0.32
VPS33A-208ENST00000543633 GPR151Q8TDV0 419 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 ZNF480Q8WV37 535 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 SLC25A46Q96AG3 418 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 ZNF764Q96H86 408 aaPredicted RBP13.07□□□□□ -0.32
VPS33A-208ENST00000543633 TMEM169Q96HH4 297 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 SNX7Q9UNH6 387 aa13.07□□□□□ -0.32
VPS33A-208ENST00000543633 NUP210Q8TEM1 1887 aaPredicted RBP13.07□□□□□ -0.32
VPS33A-208ENST00000543633 C5orf58C9J3I9 102 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 STK25O00506 426 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 MYL12BO14950 172 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 RGS5O15539 181 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 BNIP3LO60238 219 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 NPPBP16860 134 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 ELAVL4P26378 380 aaKnown RBP13.06□□□□□ -0.32
VPS33A-208ENST00000543633 GABRR2P28476 465 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 IRS1P35568 1242 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 RECQLP46063 649 aaPredicted RBP13.06□□□□□ -0.32
VPS33A-208ENST00000543633 PREPP48147 710 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 DGKGP49619 791 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 XKP51811 444 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 LIM2P55344 173 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 TAS2R50P59544 299 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 PUM1Q14671 1186 aaKnown RBP eCLIP13.06□□□□□ -0.32
VPS33A-208ENST00000543633 DCST1Q5T197 706 aa13.06□□□□□ -0.32
VPS33A-208ENST00000543633 NXNL2Q5VZ03 156 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms