RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 FGD3Q5JSP0 725 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 SAXO2Q658L1 398 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 REEP3Q6NUK4 255 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 CCDC71Q8IV32 467 aaPredicted RBP15.5■□□□□ 0.07
COL4A1-204ENST00000543140 FBLIM1Q8WUP2 373 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 MAGED4Q96JG8 741 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 OR2M4Q96R27 311 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 APOL4Q9BPW4 351 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 TUBA1CQ9BQE3 449 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 RAB11FIP5Q9BXF6 653 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 SIRT3Q9NTG7 399 aaPredicted RBP15.5■□□□□ 0.07
COL4A1-204ENST00000543140 RHCGQ9UBD6 479 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 NDRG4Q9ULP0 352 aaKnown RBP15.5■□□□□ 0.07
COL4A1-204ENST00000543140 SNX5Q9Y5X3 404 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 AP1M2Q9Y6Q5 423 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 PIAS3Q9Y6X2 628 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 TRIOO75962 3097 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 ARHGEF17Q96PE2 2063 aaPredicted RBP15.5■□□□□ 0.07
COL4A1-204ENST00000543140 ISM1B1AKI9 464 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 SEC14L2O76054 403 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 JUNBP17275 347 aaPredicted RBP15.5■□□□□ 0.07
COL4A1-204ENST00000543140 GABARAPL2P60520 117 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 EXOC3L2Q2M3D2 409 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 AP1ARQ63HQ0 302 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 MRGPRX1Q96LB2 322 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 PREBQ9HCU5 417 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 ERVK-18Q9QC07 812 aa15.5■□□□□ 0.07
COL4A1-204ENST00000543140 WBP11Q9Y2W2 641 aaKnown RBP15.5■□□□□ 0.07
COL4A1-204ENST00000543140 C5orf58C9J3I9 102 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 ZNF701M0R085 212 aaPredicted RBP15.49■□□□□ 0.07
COL4A1-204ENST00000543140 PRICKLE3O43900 615 aaPredicted RBP15.49■□□□□ 0.07
COL4A1-204ENST00000543140 FOXD2O60548 495 aaPredicted RBP15.49■□□□□ 0.07
COL4A1-204ENST00000543140 IFNA14P01570 189 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 ALPPL2P10696 532 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 ACADMP11310 421 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 CDK4P11802 303 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 CCT3P49368 545 aaKnown RBP15.49■□□□□ 0.07
COL4A1-204ENST00000543140 HYAL2Q12891 473 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 ZNF420Q8TAQ5 688 aaPredicted RBP15.49■□□□□ 0.07
COL4A1-204ENST00000543140 ZBED6CLQ96FA7 236 aaPredicted RBP15.49■□□□□ 0.07
COL4A1-204ENST00000543140 OTUB1Q96FW1 271 aaPredicted RBP15.49■□□□□ 0.07
COL4A1-204ENST00000543140 WARS2Q9UGM6 360 aaKnown RBP15.49■□□□□ 0.07
COL4A1-204ENST00000543140 NCKAP1Q9Y2A7 1128 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 DPM1O60762 260 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 ERAL1O75616 437 aaKnown RBP15.49■□□□□ 0.07
COL4A1-204ENST00000543140 INMTO95050 263 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 POU2F1P14859 743 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 LTBRP36941 435 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 SLC19A1P41440 591 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 RAB8AP61006 207 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 SLAMF1Q13291 335 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 OR10G2Q8NGC3 310 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 LCN9Q8WX39 176 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 GEMIN6Q8WXD5 167 aaKnown RBP15.49■□□□□ 0.07
COL4A1-204ENST00000543140 MS4A6EQ96DS6 147 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 TMEM19Q96HH6 336 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 ZNF347Q96SE7 839 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 OCEL1Q9H607 264 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 NEUROD4Q9HD90 331 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 ADAM29Q9UKF5 820 aa15.49■□□□□ 0.07
COL4A1-204ENST00000543140 PCDH17O14917 1159 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 VIPP01282 170 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 CCDC159P0C7I6 412 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 NR4A1P22736 598 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 GPC1P35052 558 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 RXRGP48443 463 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 MAD2L1BPQ15013 274 aaPredicted RBP15.48■□□□□ 0.07
COL4A1-204ENST00000543140 ZNF750Q32MQ0 723 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 GTF2IRD2BQ6EKJ0 949 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 TMEM92Q6UXU6 159 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 GTF2IRD2Q86UP8 949 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 TSPYL5Q86VY4 417 aaPredicted RBP15.48■□□□□ 0.07
COL4A1-204ENST00000543140 LGI4Q8N135 537 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 OR9Q2Q8NGE9 314 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 SCARF2Q96GP6 870 aaPredicted RBP15.48■□□□□ 0.07
COL4A1-204ENST00000543140 FCRL4Q96PJ5 515 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 DOK1Q99704 481 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 FBXW2Q9UKT8 454 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 GON4LQ3T8J9 2241 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 HMGN4O00479 90 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 PGRMC2O15173 223 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 NARSO43776 548 aaKnown RBP15.48■□□□□ 0.07
COL4A1-204ENST00000543140 TBX19O60806 448 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 KCNJ13O60928 360 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 CD72P21854 359 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 STT3AP46977 705 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 ZIC1Q15915 447 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 TOR1AIP1Q5JTV8 583 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 DGLUCYQ7Z3D6 616 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 ARMC8Q8IUR7 673 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 TTLQ8NG68 377 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 OR5D16Q8NGK9 328 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 OR4C15Q8NGM1 316 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 RPLP0P6Q8NHW5 317 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 NIPSNAP1Q9BPW8 284 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 RSPO3Q9BXY4 272 aaPredicted RBP15.48■□□□□ 0.07
COL4A1-204ENST00000543140 TMEM168Q9H0V1 697 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 GLIPR2Q9H4G4 154 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 SERHL2Q9H4I8 314 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 THSD1Q9NS62 852 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms