RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	PTGES3	Q15185	160 aa	Known RBP	11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	ERN2	Q76MJ5	926 aa	Known RBP	11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	NLRP8	Q86W28	1048 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	CELF2-AS1	Q8N7Q2	184 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	OR5AR1	Q8NGP9	310 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	CXorf40A	Q8TE69	158 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	CIDEC	Q96AQ7	238 aa	Predicted RBP	11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	LGR4	Q9BXB1	951 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	HOXD1	Q9GZZ0	328 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	ZNF556	Q9HAH1	456 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	EHD3	Q9NZN3	535 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	RHCG	Q9UBD6	479 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	MAP4K5	Q9Y4K4	846 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	PEX16	Q9Y5Y5	336 aa		11.94	□□□□□ -0.5
RNF4-222	ENST00000541204	IGLON5	A6NGN9	336 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	SCAMP1	O15126	338 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	PCDH8	O95206	1070 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	TIA1	P31483	386 aa	Known RBP eCLIP	11.93	□□□□□ -0.5	5e-7	■■■■□ 23.6
RNF4-222	ENST00000541204	CASP3	P42574	277 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	PRIM2	P49643	509 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	IRF3	Q14653	427 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	TST	Q16762	297 aa	Known RBP	11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	C1QTNF12	Q5T7M4	302 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	MED27	Q6P2C8	311 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	TMIE	Q8NEW7	156 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	CAPSL	Q8WWF8	208 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	CHFR	Q96EP1	664 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	FAM83C	Q9BQN1	747 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	YIPF2	Q9BWQ6	316 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	SORBS1	Q9BX66	1292 aa	Known RBP	11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	ZCCHC2	Q9C0B9	1178 aa	Known RBP	11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	TRIM39	Q9HCM9	518 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	C14orf119	Q9NWQ9	140 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	SLC23A2	Q9UGH3	650 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	DPP7	Q9UHL4	492 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	DYRK1B	Q9Y463	629 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	PLXNA2	O75051	1894 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	CTDSP2	O14595	271 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	ZW10	O43264	779 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	LAT	O43561	262 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	DYRK3	O43781	588 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	OLR1	P78380	273 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	TAP2	Q03519	686 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	EIF4H	Q15056	248 aa	Known RBP	11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	SPIN4	Q56A73	249 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	SPANXN2	Q5MJ10	180 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	GCNT6	Q5T4J0	391 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	PPP1R16A	Q96I34	528 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	MGLL	Q99685	303 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	TMEM245	Q9H330	911 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	ACER3	Q9NUN7	267 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	ERVK13-1	Q9NX77	482 aa		11.93	□□□□□ -0.5
RNF4-222	ENST00000541204	PRAMEF33	A0A0G2JMD5	474 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	RFXAP	O00287	272 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	PRAMEF10	O60809	474 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	HSD3B1	P14060	373 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	HSD3B2	P26439	372 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	SOX6	P35712	828 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	TCEA2	Q15560	299 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	RNF130	Q86XS8	419 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	OR9A1P	Q8NGU1	263 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	WDR48	Q8TAF3	677 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	HCAR2	Q8TDS4	363 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	CRELD1	Q96HD1	420 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	KXD1	Q9BQD3	176 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	NUAK2	Q9H093	628 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	PRSS16	Q9NQE7	514 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	KLHL3	Q9UH77	587 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	HCN2	Q9UL51	889 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	OR1A2	Q9Y585	309 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	KLK4	Q9Y5K2	254 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	AP1M2	Q9Y6Q5	423 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	ALPK3	Q96L96	1907 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	ATG2B	Q96BY7	2078 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	FAM227A	F5H4B4	570 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	POU1F1	P28069	291 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	ZNF658B	Q4V348	819 aa	Predicted RBP	11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	ZNF367	Q7RTV3	350 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	AQP11	Q8NBQ7	271 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	SDHC	Q99643	169 aa	Predicted RBP	11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	PLA2G2F	Q9BZM2	168 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	BHLHE41	Q9C0J9	482 aa	Predicted RBP	11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	REEP4	Q9H6H4	257 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	C1GALT1	Q9NS00	363 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	THSD1	Q9NS62	852 aa		11.92	□□□□□ -0.5
RNF4-222	ENST00000541204	PIPSL	A2A3N6	862 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	GADD45G	O95257	159 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	PAPLN	O95428	1278 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	GAST	P01350	101 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	RB1	P06400	928 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	ITGA2	P17301	1181 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	TCEA1	P23193	301 aa	Known RBP	11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	PTX3	P26022	381 aa	Predicted RBP	11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	OPRD1	P41143	372 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	XCR1	P46094	333 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	SOX9	P48436	509 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	SEC13	P55735	322 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	CDC42	P60953	191 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	CDK6	Q00534	326 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	IFITM2	Q01629	132 aa		11.91	□□□□□ -0.5

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