RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MT-CO3P00414 261 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 EIF2S1P05198 315 aaKnown RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 SERPIND1P05546 499 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 HBQ1P09105 142 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 FGF5P12034 268 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 IDO1P14902 403 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 NCF2P19878 526 aaPredicted RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 ZNF10P21506 573 aaPredicted RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 BSGP35613 385 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 TSPAN7P41732 249 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 ATP4BP51164 291 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 VSX2P58304 361 aaPredicted RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 SKP1P63208 163 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 HMGCS1Q01581 520 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 MC2RQ01718 297 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 GABPB1Q06547 395 aaPredicted RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 ACSM2AQ08AH3 577 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 EIF3IQ13347 325 aaKnown RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 DDX39BQ13838 428 aaKnown RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 GRM7Q14831 915 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 HERC3Q15034 1050 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 RPS6KA2Q15349 733 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 ISXQ2M1V0 245 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 GALNTL6Q49A17 601 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 SFRP5Q5T4F7 317 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 PHF19Q5T6S3 580 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 IL23RQ5VWK5 629 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 ACSM2BQ68CK6 577 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 ADNP2Q6IQ32 1131 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 TRIM40Q6P9F5 258 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 ABHD13Q7L211 337 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 PROSER1Q86XN7 944 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 GPR135Q8IZ08 494 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 ZCCHC7Q8N3Z6 543 aaKnown RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 RNF175Q8N4F7 328 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 ARHGEF39Q8N4T4 335 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 CSNK1A1LQ8N752 337 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 FNDC5Q8NAU1 212 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.01□□□□□ -1.29
CD44-228ENST00000528455 UTP15Q8TED0 518 aaKnown RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 TSPEARQ8WU66 669 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 ZNF501Q96CX3 271 aaPredicted RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 MVB12AQ96EY5 273 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 APIPQ96GX9 242 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 PRR11Q96HE9 360 aaPredicted RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 FCRL1Q96LA6 429 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 PPP1R36Q96LQ0 422 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 LRRC37BQ96QE4 947 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 HBEGFQ99075 208 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 TM9SF2Q99805 663 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 NPLQ9BXD5 320 aaPredicted RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 B3GNT4Q9C0J1 378 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 SPRTNQ9H040 489 aaPredicted RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 KLHL31Q9H511 634 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 FANCEQ9HB96 536 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 MS4A12Q9NXJ0 267 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.01□□□□□ -1.29
CD44-228ENST00000528455 MCM8Q9UJA3 840 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 CDC14AQ9UNH5 594 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 GPR45Q9Y5Y3 372 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 PTGDR2Q9Y5Y4 395 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 NBEAQ8NFP9 2946 aa7□□□□□ -1.29
CD44-228ENST00000528455 SPTBP11277 2137 aa7□□□□□ -1.29
CD44-228ENST00000528455 ARHGAP10A1A4S6 786 aa7□□□□□ -1.29
CD44-228ENST00000528455 H0YIG0 161 aa7□□□□□ -1.29
CD44-228ENST00000528455 PLPP1O14494 284 aa7□□□□□ -1.29
CD44-228ENST00000528455 POLR1CO15160 346 aaPredicted RBP7□□□□□ -1.29
CD44-228ENST00000528455 CASC3O15234 703 aaKnown RBP7□□□□□ -1.29
CD44-228ENST00000528455 SCELO95171 688 aa7□□□□□ -1.29
CD44-228ENST00000528455 ONECUT2O95948 504 aa7□□□□□ -1.29
CD44-228ENST00000528455 CAPNS1P04632 268 aa7□□□□□ -1.29
CD44-228ENST00000528455 KLK1P06870 262 aa7□□□□□ -1.29
CD44-228ENST00000528455 ANXA4P09525 319 aaPredicted RBP7□□□□□ -1.29
CD44-228ENST00000528455 BCKDHAP12694 445 aa7□□□□□ -1.29
CD44-228ENST00000528455 ALOX12P18054 663 aa7□□□□□ -1.29
CD44-228ENST00000528455 HIST1H1TP22492 207 aaPredicted RBP7□□□□□ -1.29
CD44-228ENST00000528455 ATP5A1P25705 553 aaKnown RBP7□□□□□ -1.29
CD44-228ENST00000528455 HNRNPH1P31943 449 aaKnown RBP7□□□□□ -1.29
CD44-228ENST00000528455 ASMTP46597 345 aa7□□□□□ -1.29
CD44-228ENST00000528455 CD97P48960 835 aa7□□□□□ -1.29
CD44-228ENST00000528455 RAP1GDS1P52306 607 aa7□□□□□ -1.29
CD44-228ENST00000528455 MTTPP55157 894 aa7□□□□□ -1.29
CD44-228ENST00000528455 ITGA1P56199 1179 aa7□□□□□ -1.29
CD44-228ENST00000528455 CLDN8P56748 225 aa7□□□□□ -1.29
CD44-228ENST00000528455 CYP4F2P78329 520 aa7□□□□□ -1.29
CD44-228ENST00000528455 RAE1P78406 368 aaKnown RBP7□□□□□ -1.29
CD44-228ENST00000528455 CYP4F3Q08477 520 aa7□□□□□ -1.29
CD44-228ENST00000528455 SLC9A5Q14940 896 aa7□□□□□ -1.29
CD44-228ENST00000528455 MSMPQ1L6U9 139 aa7□□□□□ -1.29
CD44-228ENST00000528455 MUM1Q2TAK8 710 aa7□□□□□ -1.29
CD44-228ENST00000528455 HKDC1Q2TB90 917 aa7□□□□□ -1.29
CD44-228ENST00000528455 TOR1AIP1Q5JTV8 583 aa7□□□□□ -1.29
CD44-228ENST00000528455 CCNYL2Q5T2Q4 361 aa7□□□□□ -1.29
CD44-228ENST00000528455 MRM1Q6IN84 353 aaKnown RBP7□□□□□ -1.29
CD44-228ENST00000528455 C22orf34Q6ZV56 151 aa7□□□□□ -1.29
CD44-228ENST00000528455 MED25Q71SY5 747 aa7□□□□□ -1.29
CD44-228ENST00000528455 COMMD6Q7Z4G1 85 aa7□□□□□ -1.29
CD44-228ENST00000528455 MTDHQ86UE4 582 aaKnown RBP7□□□□□ -1.29
CD44-228ENST00000528455 C1orf52Q8N6N3 182 aaKnown RBP7□□□□□ -1.29
CD44-228ENST00000528455 NATD1Q8N6N6 113 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms