RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 PSD3Q9NYI0 1048 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 ABI3Q9P2A4 366 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 FETUBQ9UGM5 382 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 PPT2Q9UMR5 302 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 PCDHGB6Q9Y5F9 930 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 PCDHGA11Q9Y5H2 935 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 TNPO3Q9Y5L0 923 aaKnown RBP9.92□□□□□ -0.82
CD44-227ENST00000528086 FREM3P0C091 2139 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 NINQ8N4C6 2090 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 EXPH5Q8NEV8 1989 aa9.92□□□□□ -0.82
CD44-227ENST00000528086 UNC79Q9P2D8 2635 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 CACNA1DQ01668 2161 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 A0A0G2JMM0 328 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 A0A1W2PPB8 328 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 A0A1W2PRS3 328 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 ARHGAP10A1A4S6 786 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 PINLYPA6NC86 204 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 KIR3DP1A8MWS1 328 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 G3V2L1 256 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 FOXE1O00358 373 aaPredicted RBP9.91□□□□□ -0.82
CD44-227ENST00000528086 UBFD1O14562 309 aaKnown RBP9.91□□□□□ -0.82
CD44-227ENST00000528086 PGRMC2O15173 223 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 CLDN9O95484 217 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 IGKV3-11P04433 115 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 PYGBP11216 843 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 TNFRSF8P28908 595 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 SERPINB1P30740 379 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 HSD17B3P37058 310 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 SSR2P43308 183 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 HTR6P50406 440 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 TNFRSF17Q02223 184 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 GALNT1Q10472 559 aaPredicted RBP9.91□□□□□ -0.82
CD44-227ENST00000528086 TBL3Q12788 808 aaKnown RBP9.91□□□□□ -0.82
CD44-227ENST00000528086 SLC13A2Q13183 592 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 CUL3Q13618 768 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 ELAVL1Q15717 326 aaKnown RBP9.91□□□□□ -0.82
CD44-227ENST00000528086 TSNAXIP1Q2TAA8 658 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 AP5B1Q2VPB7 878 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 GGTA1PQ4G0N0 100 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 ZNF678Q5SXM1 525 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 KLC3Q6P597 504 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 LYPD8Q6UX82 237 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 CHSY3Q70JA7 882 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 GALNTL5Q7Z4T8 443 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 MYLK4Q86YV6 388 aaPredicted RBP9.91□□□□□ -0.82
CD44-227ENST00000528086 SLC5A8Q8N695 610 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 BCORP1Q8N888 145 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 EIF1ADQ8N9N8 165 aaKnown RBP9.91□□□□□ -0.82
CD44-227ENST00000528086 RGMAQ96B86 450 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 PPWD1Q96BP3 646 aaKnown RBP9.91□□□□□ -0.82
CD44-227ENST00000528086 SCYL1Q96KG9 808 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 UTP23Q9BRU9 249 aaKnown RBP9.91□□□□□ -0.82
CD44-227ENST00000528086 MRPL1Q9BYD6 325 aaKnown RBP9.91□□□□□ -0.82
CD44-227ENST00000528086 SLC29A3Q9BZD2 475 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 DEPPQ9NTK1 212 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 OLAHQ9NV23 265 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 TBK1Q9UHD2 729 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 OSGIN2Q9Y236 505 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 ANGPTL3Q9Y5C1 460 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 ITPR2Q14571 2701 aa9.91□□□□□ -0.82
CD44-227ENST00000528086 GLOD5A6NK44 160 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 CLDN4O14493 209 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 NME2P1O60361 137 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 ITGA10O75578 1167 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 OR4F21O95013 312 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 AGFG2O95081 481 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 NADKO95544 446 aaPredicted RBP9.9□□□□□ -0.82
CD44-227ENST00000528086 AIFM1O95831 613 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 SP1P08047 785 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 STSP08842 583 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 NME2P22392 152 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 CPN2P22792 545 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 PTX3P26022 381 aaPredicted RBP9.9□□□□□ -0.82
CD44-227ENST00000528086 HLCSP50747 726 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 HK2P52789 917 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 ARFIP1P53367 373 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 VSNL1P62760 191 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 AP2B1P63010 937 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 HERVK_113P63132 956 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 FOLH1Q04609 750 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 CLCQ05315 142 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 DUSP2Q05923 314 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 INAQ16352 499 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 ZNF750Q32MQ0 723 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 TEX35Q5T0J7 233 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 FRG2Q64ET8 278 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 SLC25A25Q6KCM7 469 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 FAM180AQ6UWF9 173 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.9□□□□□ -0.82
CD44-227ENST00000528086 GPR180Q86V85 440 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 SRFBP1Q8NEF9 429 aaKnown RBP9.9□□□□□ -0.82
CD44-227ENST00000528086 SLC2A12Q8TD20 617 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 ADAMTS18Q8TE60 1221 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 EPS8L3Q8TE67 593 aaKnown RBP9.9□□□□□ -0.82
CD44-227ENST00000528086 TRPC4APQ8TEL6 797 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 SSC4DQ8WTU2 575 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 VMP1Q96GC9 406 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 FRG2BQ96QU4 278 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 HBEGFQ99075 208 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 ERVK-6Q9BXR3 956 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms