RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 HMGB1P1B2RPK0 211 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-204ENST00000526430 ZSCAN9O15535 394 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-204ENST00000526430 NPHS1O60500 1241 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 H2AFYO75367 372 aaKnown RBP10.25□□□□□ -0.77
NEDD8-204ENST00000526430 CLEC3AO75596 197 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 RASAL1O95294 804 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 ESRRBO95718 433 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 EIF2S1P05198 315 aaKnown RBP10.25□□□□□ -0.77
NEDD8-204ENST00000526430 FGF4P08620 206 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 CHN1P15882 459 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 BGNP21810 368 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 HTR6P50406 440 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 GALNT1Q10472 559 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-204ENST00000526430 LCP2Q13094 533 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 PWP1Q13610 501 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 RBBP5Q15291 538 aaKnown RBP10.25□□□□□ -0.77
NEDD8-204ENST00000526430 CPSF6Q16630 551 aaKnown RBP eCLIP10.25□□□□□ -0.77
NEDD8-204ENST00000526430 TUBB8Q3ZCM7 444 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 NKAIN1Q4KMZ8 207 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 TCTE1Q5JU00 501 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 MED27Q6P2C8 311 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 TLDC1Q6P9B6 456 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 KIRREL2Q6UWL6 708 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 COX15Q7KZN9 410 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 CSNK1A1LQ8N752 337 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 AMER3Q8N944 861 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 ANKRD42Q8N9B4 389 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 HUS1BQ8NHY5 278 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 UTP15Q8TED0 518 aaKnown RBP10.25□□□□□ -0.77
NEDD8-204ENST00000526430 THAP3Q8WTV1 239 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-204ENST00000526430 CA5BP1Q8WTZ4 195 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 FKBP10Q96AY3 582 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 MS4A6EQ96DS6 147 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 MAGED4Q96JG8 741 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 ZNF559Q9BR84 538 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 MS4A8Q9BY19 250 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 ZNF717Q9BY31 904 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-204ENST00000526430 SHCBP1LQ9BZQ2 653 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 DRC3Q9H069 523 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 IQCGQ9H095 443 aaKnown RBP10.25□□□□□ -0.77
NEDD8-204ENST00000526430 WDR54Q9H977 334 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 ACTR8Q9H981 624 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 PRDM7Q9NQW5 492 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 PSD3Q9NYI0 1048 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 TRPS1Q9UHF7 1281 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 ST6GALNAC2Q9UJ37 374 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 CCL27Q9Y4X3 112 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 TIMM22Q9Y584 194 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 ANGPTL3Q9Y5C1 460 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 HS3ST3B1Q9Y662 390 aa10.25□□□□□ -0.77
NEDD8-204ENST00000526430 HIVEP2P31629 2446 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 GOLGA6L10A6NI86 522 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 MAGEB17A8MXT2 336 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 MANBAO00462 879 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 FFAR3O14843 346 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 GPR42O15529 346 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 PRAMEF2O60811 474 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 SNNO75324 88 aaPredicted RBP10.24□□□□□ -0.77
NEDD8-204ENST00000526430 LYPLA1O75608 230 aaPredicted RBP10.24□□□□□ -0.77
NEDD8-204ENST00000526430 OTCP00480 354 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 TGFB1P01137 390 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 HEXAP06865 529 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 SERPINA6P08185 405 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 CXCR2P25025 360 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 SERPINB3P29508 390 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 SOX11P35716 441 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 CCNG1P51959 295 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 EFNA3P52797 238 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 FOXL2P58012 376 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 LAPTM5Q13571 262 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 GRM7Q14831 915 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 CEBPEQ15744 281 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 TMEM198Q66K66 360 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 GPRIN3Q6ZVF9 776 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 Q71RC1 249 aaPredicted RBP10.24□□□□□ -0.77
NEDD8-204ENST00000526430 KRT78Q8N1N4 520 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 CDYL2Q8N8U2 506 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 SEC16BQ96JE7 1060 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 C18orf12Q96KH6 178 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 QRFPRQ96P65 431 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 F2RL3Q96RI0 385 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 TUBB1Q9H4B7 451 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 SLC24A3Q9HC58 644 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 MID1IP1Q9NPA3 183 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 CUTCQ9NTM9 273 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 ZDHHC2Q9UIJ5 367 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 HAO1Q9UJM8 370 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 MID2Q9UJV3 735 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 SLC22A7Q9Y694 548 aa10.24□□□□□ -0.77
NEDD8-204ENST00000526430 DNAJC13O75165 2243 aa10.23□□□□□ -0.77
NEDD8-204ENST00000526430 ZANQ9Y493 2812 aa10.23□□□□□ -0.77
NEDD8-204ENST00000526430 CHD3Q12873 2000 aaKnown RBP10.23□□□□□ -0.77
NEDD8-204ENST00000526430 SERTM1A2A2V5 107 aa10.23□□□□□ -0.77
NEDD8-204ENST00000526430 TMEM233B4DJY2 109 aa10.23□□□□□ -0.77
NEDD8-204ENST00000526430 FOXE1O00358 373 aaPredicted RBP10.23□□□□□ -0.77
NEDD8-204ENST00000526430 DSCR3O14972 297 aa10.23□□□□□ -0.77
NEDD8-204ENST00000526430 MLYCDO95822 493 aa10.23□□□□□ -0.77
NEDD8-204ENST00000526430 PDYNP01213 254 aa10.23□□□□□ -0.77
NEDD8-204ENST00000526430 SERPINE1P05121 402 aa10.23□□□□□ -0.77
NEDD8-204ENST00000526430 HPDP32754 393 aaPredicted RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms