RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 CPAMD8Q8IZJ3 1885 aa8.72□□□□□ -1.01
HDAC3-215ENST00000519474 TENM4Q6N022 2769 aa8.72□□□□□ -1.01
HDAC3-215ENST00000519474 STX16-NPEPL1H3BU86 382 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 FOXE1O00358 373 aaPredicted RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 PLPP1O14494 284 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 STX16O14662 325 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 LRRTM2O43300 516 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 RIPK2O43353 540 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 UGDHO60701 494 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 ETHE1O95571 254 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 CRYABP02511 175 aaKnown RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 STSP08842 583 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 RHOXF2BP0C7M4 288 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 CNTFP26441 200 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 EEF1DP29692 281 aaKnown RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 SERPINB1P30740 379 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 TRHRP34981 398 aaPredicted RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 BSGP35613 385 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 PIK3CGP48736 1102 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 CLCN2P51788 898 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 ARFIP1P53367 373 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 KCNK10P57789 538 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 TAS2R50P59544 299 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 PMP22Q01453 160 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 OC90Q02509 493 aaPredicted RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 SLC29A2Q14542 456 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 INAQ16352 499 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 CPSF6Q16630 551 aaKnown RBP eCLIP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 C4orf17Q53FE4 359 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 MRM1Q6IN84 353 aaKnown RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 RPS27LQ71UM5 84 aaKnown RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 TRMT10CQ7L0Y3 403 aaKnown RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 OR4N5Q8IXE1 308 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 PTGR2Q8N8N7 351 aaPredicted RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 THAP3Q8WTV1 239 aaPredicted RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 NCLNQ969V3 563 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 NSUN5Q96P11 429 aaKnown RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 CDK15Q96Q40 435 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 RHOXF2Q9BQY4 288 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 ZNF717Q9BY31 904 aaPredicted RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 EPB41L4BQ9H329 900 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 ACTR8Q9H981 624 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 LIN28AQ9H9Z2 209 aaKnown RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 DMRT3Q9NQL9 472 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 TMEM216Q9P0N5 145 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 LRFN1Q9P244 771 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 FBXW2Q9UKT8 454 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 MRPS33Q9Y291 106 aaKnown RBP8.71□□□□□ -1.02
HDAC3-215ENST00000519474 ATG4BQ9Y4P1 393 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 ASB4Q9Y574 426 aa8.71□□□□□ -1.02
HDAC3-215ENST00000519474 POLEQ07864 2286 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 A0A1B0GTL3 188 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 ASPDHA6ND91 283 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 PROM1O43490 865 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 ZFAND5O76080 213 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 CLDN9O95484 217 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 CLDN1O95832 211 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 IFNA16P05015 189 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 ABHD2P08910 425 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 CD46P15529 392 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 TNNI3P19429 210 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 CPN2P22792 545 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 CYB561P49447 251 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 HLCSP50747 726 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 CDH13P55290 713 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 HNRNPH2P55795 449 aaKnown RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 IGLV3-21P80748 117 aaPredicted RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 ID2Q02363 134 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 CUL3Q13618 768 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 DDX39BQ13838 428 aaKnown RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 RCN2Q14257 317 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 TERF2Q15554 542 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 ELAVL1Q15717 326 aaKnown RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 MAPKAPK3Q16644 382 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 RNFT1Q5M7Z0 435 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 LGSNQ5TDP6 509 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 C18orf63Q68DL7 685 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 GFRALQ6UXV0 394 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 C16orf47Q6ZP98 133 aaPredicted RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 DGAT2L6Q6ZPD8 337 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 GALNTL5Q7Z4T8 443 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 MILR1Q7Z6M3 343 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 GPR180Q86V85 440 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 MYLK4Q86YV6 388 aaPredicted RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 TMEM132CQ8N3T6 1108 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 ZCCHC7Q8N3Z6 543 aaKnown RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 ZNF321PQ8N8H1 164 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 MORN4Q8NDC4 146 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 OR52B6Q8NGF0 335 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 ADAMTS18Q8TE60 1221 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 RELTQ969Z4 430 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 ATP6V1E2Q96A05 226 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 PPWD1Q96BP3 646 aaKnown RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 VMP1Q96GC9 406 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 C5orf34Q96MH7 638 aa8.7□□□□□ -1.02
HDAC3-215ENST00000519474 MRPL57Q9BQC6 102 aaKnown RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 RPF2Q9H7B2 306 aaKnown RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 DDX31Q9H8H2 851 aaKnown RBP8.7□□□□□ -1.02
HDAC3-215ENST00000519474 COPS7BQ9H9Q2 264 aaPredicted RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms