RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 SNRPEP62304 92 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HERVK_113P63132 956 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ERVK-8P63133 956 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TPM4P67936 248 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CSNK2A1P68400 391 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NUCB2P80303 420 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MRPS15P82914 257 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDKL1Q00532 357 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MYBPC1Q00872 1141 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CNTN2Q02246 1040 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CFHR1Q03591 330 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MBTD1Q05BQ5 628 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GABPAQ06546 454 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC3A1Q07837 685 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLC1Q07866 573 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPOCK1Q08629 439 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FGL1Q08830 312 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM27E3Q08E93 113 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DMPKQ09013 629 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 BST1Q10588 318 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PMPCAQ10713 525 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FUT7Q11130 342 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ST3GAL1Q11201 340 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MERTKQ12866 999 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 BNIP1Q12981 228 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAGE1Q13065 139 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAGE4Q13068 117 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MYBPHQ13203 477 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NME3Q13232 169 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAD2L1Q13257 205 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPIL2Q13356 520 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 UBE2V1Q13404 147 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTX1Q13505 466 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ENPP2Q13822 863 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 COTL1Q14019 142 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 VEZF1Q14119 521 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 KEAP1Q14145 624 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPR18Q14330 331 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GK2Q14410 553 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GANABQ14697 944 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM132DQ14C87 1099 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARHGEF6Q15052 776 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NCF4Q15080 339 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANGPT1Q15389 498 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRIP10Q15642 601 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NPTX1Q15818 432 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HSPB2Q16082 182 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACKR1Q16570 336 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CALCRLQ16602 461 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTGISQ16647 500 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAPK6Q16659 721 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZSWIM7Q19AV6 140 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C2orf68Q2NKX9 166 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PARP6Q2NL67 630 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HKDC1Q2TB90 917 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTU2Q2VPK5 515 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HNRNPA1L2Q32P51 320 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADPRMQ3LIE5 342 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ITPRIPL2Q3MIP1 535 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DCAF4L1Q3SXM0 396 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 Q4G0T1 1027 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SYTL3Q4VX76 610 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF585BQ52M93 769 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPAT3Q53EU6 434 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LACTB2Q53H82 288 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HSP90AA4PQ58FG1 418 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CMPK2Q5EBM0 449 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARL13AQ5H913 290 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 BEX5Q5H9J7 111 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARMCX4Q5H9R4 360 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPP6R3Q5H9R7 873 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C6orf226Q5I0X4 101 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 EARS2Q5JPH6 523 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTSL3PQ5NE16 218 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C10orf120Q5SQS8 335 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PHYHD1Q5SRE7 291 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LDLRAP1Q5SW96 308 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRAMEF19Q5SWL8 479 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDZK1Q5T2W1 519 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PIP5KL1Q5T9C9 394 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 WLSQ5T9L3 541 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C20orf194Q5TEA3 1177 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRAMEF5Q5TYX0 476 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATF7IP2Q5U623 682 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 IRAK1BP1Q5VVH5 260 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RSBN1Q5VWQ0 802 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRAMEF6Q5VXH4 476 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRAMEF7Q5VXH5 474 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NKAIN2Q5VXU1 208 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAET1LQ5VY80 246 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TTC23Q5W5X9 447 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLCXD3Q63HM9 321 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NSUN5P2Q63ZY6 315 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FRG2Q64ET8 278 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRRC66Q68CR7 880 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C18orf63Q68DL7 685 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF324BQ6AW86 544 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ASPHD2Q6ICH7 369 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SNRNP48Q6IEG0 339 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR7E24Q6IFN5 339 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms