RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 A8MV72 311 aaPredicted RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 P4HA2O15460 535 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 REC8O95072 547 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 STAG3L1P0CL83 205 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 PPP5CP53041 499 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 GSTO1P78417 241 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 CBX1P83916 185 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 CCDC173Q0VFZ6 552 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 SYCP1Q15431 976 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 PTGISQ16647 500 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 ARMCX4Q5H9R4 360 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 CCDC122Q5T0U0 273 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 RPUSD3Q6P087 351 aaKnown RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 OR8H2Q8N162 312 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 SLC26A7Q8TE54 656 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 AFAP1L1Q8TED9 768 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 TCP11Q8WWU5 503 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 EXOC4Q96A65 974 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 OTUB1Q96FW1 271 aaPredicted RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 IMMP1LQ96LU5 166 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 NUDT16L1Q9BRJ7 211 aaKnown RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 ALDH8A1Q9H2A2 487 aaPredicted RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 RPF1Q9H9Y2 349 aaKnown RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP1.71□□□□□ -2.14
NUP54-208ENST00000508604 ZNHIT6Q9NWK9 470 aaKnown RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 C6orf203Q9P0P8 240 aaPredicted RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 SPATA7Q9P0W8 599 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 RABL2AQ9UBK7 228 aaPredicted RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 SATB2Q9UPW6 733 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 BRD4O60885 1362 aaPredicted RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 A0A1W2PRQ8 180 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 ZFP92A6NM28 416 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 CCT8L1PA6NM43 557 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 ERVV-1B6SEH8 477 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 AP5Z1O43299 807 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 FIBPO43427 364 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 SPRY1O43609 319 aaPredicted RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 SMC2O95347 1197 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 STARD3NLO95772 234 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 TPM1P09493 284 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 ZNF24P17028 368 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 EPORP19235 508 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 NF2P35240 595 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 MAGEA9P43362 315 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 VWC2Q2TAL6 325 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 KRTAP21-2Q3LI59 83 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 KBTBD12Q3ZCT8 623 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 CCDC152Q4G0S7 254 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 FAM133BQ5BKY9 247 aaKnown RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 BMP2KLQ5H9B9 411 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 HHATQ5VTY9 493 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 PLPPR4Q7Z2D5 763 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 PRUNE1Q86TP1 453 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 CCDC65Q8IXS2 484 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 PEX5LQ8IYB4 626 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 ZNF561Q8N587 486 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 ERMNQ8TAM6 284 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 N4BP2L2Q92802 583 aaPredicted RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 RBM41Q96IZ5 413 aaKnown RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 GCNAQ96QF7 691 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 CCT8L2Q96SF2 557 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 SLF1Q9BQI6 1058 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 TCHPQ9BT92 498 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 NACA2Q9H009 215 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 CUEDC2Q9H467 287 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 RABEP2Q9H5N1 569 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 XAB2Q9HCS7 855 aaKnown RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 OLAHQ9NV23 265 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 IL20Q9NYY1 176 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 SEPT10Q9P0V9 454 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 C5AR2Q9P296 337 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 UBQLN2Q9UHD9 624 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 CFAP45Q9UL16 551 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 FBXO7Q9Y3I1 522 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 N6AMT1Q9Y5N5 214 aa1.71□□□□□ -2.14
NUP54-208ENST00000508604 MAGED1Q9Y5V3 778 aaPredicted RBP1.71□□□□□ -2.14
NUP54-208ENST00000508604 AKNAQ7Z591 1439 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 SPAG9O60271 1321 aaKnown RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 EVC2Q86UK5 1308 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 A0A1W2PPM1 405 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 FAM170AA1A519 330 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 GTPBP10A4D1E9 387 aaKnown RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 LMO7DNF2Z398 122 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 GOLGA6L19H0YKK7 550 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 UBE2CO00762 179 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 CPLX1O14810 134 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 PLOD3O60568 738 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 PSMD10O75832 226 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 ANGPTL1O95841 491 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 PENKP01210 267 aaPredicted RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 MT-ND2P03891 347 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 CPN1P15169 458 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 RPS2P15880 293 aaKnown RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 CYP11B2P19099 503 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 CHMLP26374 656 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 MNAT1P51948 309 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 NDST1P52848 882 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 CSE1LP55060 971 aaKnown RBP1.7□□□□□ -2.14
NUP54-208ENST00000508604 LINC00315P59091 139 aa1.7□□□□□ -2.14
NUP54-208ENST00000508604 NUCB1Q02818 461 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms