RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 AMZ2Q86W34 360 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 C17orf64Q86WR6 236 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 HEATR4Q86WZ0 1026 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 SLC44A2Q8IWA5 706 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-204ENST00000501271 STX19Q8N4C7 294 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 B3GNT7Q8NFL0 401 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 GPR32P1Q8NGA4 272 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 CXorf40AQ8TE69 158 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 RAB8BQ92930 207 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 NEURL3Q96EH8 262 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 PPP1R16AQ96I34 528 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 COL21A1Q96P44 957 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 RAD9AQ99638 391 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 MENTQ9BUN1 341 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 RHBGQ9H310 441 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 TMEM245Q9H330 911 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 RNF167Q9H6Y7 350 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 LHX9Q9NQ69 397 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 CHCHD3Q9NX63 227 aaKnown RBP9.38□□□□□ -0.91
CLIP1-204ENST00000501271 SPATA7Q9P0W8 599 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 DEC1Q9P2X7 70 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 SNX11Q9Y5W9 270 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 MYO10Q9HD67 2058 aa9.38□□□□□ -0.91
CLIP1-204ENST00000501271 TRBV4-1A0A0J9YWV2 114 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 METTL15A6NJ78 407 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 ZAR1LA6NP61 321 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 PDPK1O15530 556 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 SERPINB7O75635 380 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 SEMA3DO95025 777 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 FGBP02675 491 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 PCCBP05166 539 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 RB1P06400 928 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 UGT2B10P36537 528 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 MANFP55145 182 aaKnown RBP9.37□□□□□ -0.91
CLIP1-204ENST00000501271 CD300CQ08708 224 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 DOC2BQ14184 412 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 MAPK11Q15759 364 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 LEXMQ3ZCV2 418 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 ZNF404Q494X3 552 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 CACUL1Q86Y37 369 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 SLC30A8Q8IWU4 369 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 C12orf76Q8N812 135 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-204ENST00000501271 OR5K2Q8NHB8 316 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 UCN3Q969E3 161 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 TMEM19Q96HH6 336 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 OR51E2Q9H255 320 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 DYRK4Q9NR20 520 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 POLE4Q9NR33 117 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 SIRT3Q9NTG7 399 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-204ENST00000501271 AHSPQ9NZD4 102 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 SNRNP200O75643 2136 aaKnown RBP9.37□□□□□ -0.91
CLIP1-204ENST00000501271 LOC100506127A0A0U1RQW1 187 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 ARRDC5A6NEK1 342 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 H7BY64 318 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 DSCR3O14972 297 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 CAPN5O15484 640 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-204ENST00000501271 ZSCAN9O15535 394 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-204ENST00000501271 TMPRSS11DO60235 418 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 ADAM23O75077 832 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 CD40LGP29965 261 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 CNR2P34972 360 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 CDC42P60953 191 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 CDK3Q00526 305 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 CNTN1Q12860 1018 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 RPA4Q13156 261 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 SEC23BQ15437 767 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 ARMCX4Q5H9R4 360 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 TAGAPQ8N103 731 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 OR5P2Q8WZ92 322 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 EXOSC8Q96B26 276 aaKnown RBP9.37□□□□□ -0.91
CLIP1-204ENST00000501271 PRAP1Q96NZ9 151 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 MAPKAP1Q9BPZ7 522 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 AIF1LQ9BQI0 150 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 WFDC6Q9BQY6 131 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 SERHL2Q9H4I8 314 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 PELI2Q9HAT8 420 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 A4GALTQ9NPC4 353 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 WASH6PQ9NQA3 447 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 TEX10Q9NXF1 929 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-204ENST00000501271 TRANK1O15050 2925 aa9.37□□□□□ -0.91
CLIP1-204ENST00000501271 DSPPQ9NZW4 1301 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 A0A1W2PPV9 198 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 C5orf58C9J3I9 102 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 STK25O00506 426 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 MFN2O95140 757 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 RPLP0P05388 317 aaKnown RBP9.36□□□□□ -0.91
CLIP1-204ENST00000501271 HSMCR30P0CW71 290 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 DBTP11182 482 aaKnown RBP9.36□□□□□ -0.91
CLIP1-204ENST00000501271 POU1F1P28069 291 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 EIF2DP41214 584 aaKnown RBP9.36□□□□□ -0.91
CLIP1-204ENST00000501271 IL12RB1P42701 662 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 RGS6P49758 472 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 LIMK1P53667 647 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 CRISP1P54107 249 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 PCBP4P57723 403 aaKnown RBP9.36□□□□□ -0.91
CLIP1-204ENST00000501271 TUBA1BP68363 451 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 REEP5Q00765 189 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 EIF4HQ15056 248 aaKnown RBP9.36□□□□□ -0.91
CLIP1-204ENST00000501271 FAM78AQ5JUQ0 283 aa9.36□□□□□ -0.91
CLIP1-204ENST00000501271 COLEC12Q5KU26 742 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms