RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 SH2D2AQ9NP31 389 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.56□□□□□ -0.24
TRAF4-212ENST00000498540 KIAA1549Q9HCM3 1950 aa13.56□□□□□ -0.24
TRAF4-212ENST00000498540 FBN3Q75N90 2809 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 SYNDIG1LA6NDD5 238 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 LDB3O75112 727 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 CLEC3AO75596 197 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 ATE1O95260 518 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 ETHE1O95571 254 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 TTC4O95801 387 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 GNAZP19086 355 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 CDC25BP30305 580 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 PEX19P40855 299 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 SLC6A12P48065 614 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 ASCL1P50553 236 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 MTTPP55157 894 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 WNT3P56703 355 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 ID2Q02363 134 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 ASPHQ12797 758 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 STX4Q12846 297 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 ZNF460Q14592 562 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 CYP1B1Q16678 543 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 TEDDM1Q5T9Z0 273 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 PRAMEF20Q5VT98 475 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 ABHD17CQ6PCB6 329 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 CAMKMTQ7Z624 323 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 TRIM58Q8NG06 486 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 ZNF721Q8TF20 911 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 CAPZA3Q96KX2 299 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 PPANQ9NQ55 473 aaKnown RBP13.55□□□□□ -0.24
TRAF4-212ENST00000498540 CORO1CQ9ULV4 474 aaPredicted RBP13.55□□□□□ -0.24
TRAF4-212ENST00000498540 EDARQ9UNE0 448 aa13.55□□□□□ -0.24
TRAF4-212ENST00000498540 LRRC3CA6NJW4 275 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 HSPB2A8KAH6 182 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 H2AFYO75367 372 aaKnown RBP13.54□□□□□ -0.24
TRAF4-212ENST00000498540 RAF1P04049 648 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 TNNI3P19429 210 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 TACR1P25103 407 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 CDKL1Q00532 357 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 EFTUD2Q15029 972 aaKnown RBP eCLIP13.54□□□□□ -0.245e-8■■■■■ 30.2
TRAF4-212ENST00000498540 HSPB2Q16082 182 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 DEFB113Q30KQ7 82 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 ZNF791Q3KP31 576 aaPredicted RBP13.54□□□□□ -0.24
TRAF4-212ENST00000498540 PIGGQ5H8A4 983 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 TRMT10BQ6PF06 316 aaKnown RBP13.54□□□□□ -0.24
TRAF4-212ENST00000498540 LYPD8Q6UX82 237 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 BIVMQ86UB2 503 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 C9orf40Q8IXQ3 194 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 FBXW8Q8N3Y1 598 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 RASGEF1CQ8N431 466 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 TNIP2Q8NFZ5 429 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 OR5L2Q8NGL0 311 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 RNASE6Q93091 150 aaKnown RBP13.54□□□□□ -0.24
TRAF4-212ENST00000498540 RUNDC3BQ96NL0 473 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 COPS7BQ9H9Q2 264 aaPredicted RBP13.54□□□□□ -0.24
TRAF4-212ENST00000498540 PROK2Q9HC23 129 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 PRDM7Q9NQW5 492 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 OARD1Q9Y530 152 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 NINQ8N4C6 2090 aa13.54□□□□□ -0.24
TRAF4-212ENST00000498540 ANKDD1BA6NHY2 528 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 DVL2O14641 736 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 PRAMEF4O60810 478 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 GSTM2P28161 218 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 TRPC1P48995 793 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 HNMTP50135 292 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 KCNJ2P63252 427 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 SERTAD2Q14140 314 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 RCN2Q14257 317 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 DAZAP2Q15038 168 aaPredicted RBP13.53□□□□□ -0.24
TRAF4-212ENST00000498540 TSNQ15631 228 aaKnown RBP13.53□□□□□ -0.24
TRAF4-212ENST00000498540 MPEG1Q2M385 716 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 FBXL19-AS1Q494R0 122 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 ACSF3Q4G176 576 aaPredicted RBP13.53□□□□□ -0.24
TRAF4-212ENST00000498540 HP1BP3Q5SSJ5 553 aaPredicted RBP13.53□□□□□ -0.24
TRAF4-212ENST00000498540 PRAMEF9Q5VWM5 478 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 SLC22A10Q63ZE4 541 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 POMZP3Q6PJE2 187 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 ZNF793Q6ZN11 406 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 ZNF662Q6ZS27 426 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 KRT78Q8N1N4 520 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 LRRC25Q8N386 305 aaPredicted RBP13.53□□□□□ -0.24
TRAF4-212ENST00000498540 NEIL3Q8TAT5 605 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 PAQR8Q8TEZ7 354 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 ANKRD9Q96BM1 317 aaPredicted RBP13.53□□□□□ -0.24
TRAF4-212ENST00000498540 RHBDF1Q96CC6 855 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 CFAP36Q96G28 342 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 F2RL3Q96RI0 385 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 MAPKAP1Q9BPZ7 522 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 NT5DC2Q9H857 520 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 ZFP64Q9NPA5 681 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 COPS7AQ9UBW8 275 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 ZNF490Q9ULM2 529 aaPredicted RBP13.53□□□□□ -0.24
TRAF4-212ENST00000498540 BOKQ9UMX3 212 aaPredicted RBP13.53□□□□□ -0.24
TRAF4-212ENST00000498540 PCDHGB3Q9Y5G1 929 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 PSAT1Q9Y617 370 aa13.53□□□□□ -0.24
TRAF4-212ENST00000498540 FN1P02751 2386 aaKnown RBP13.52□□□□□ -0.24
TRAF4-212ENST00000498540 NCF1BA6NI72 391 aaPredicted RBP13.52□□□□□ -0.25
TRAF4-212ENST00000498540 NCF1CA8MVU1 366 aaPredicted RBP13.52□□□□□ -0.25
TRAF4-212ENST00000498540 LRATO95237 230 aa13.52□□□□□ -0.25
TRAF4-212ENST00000498540 NCF1P14598 390 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms