RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CASC4Q6P4E1 433 aa13.1□□□□□ -0.31
PRPF40A-211ENST00000493468 DND1Q8IYX4 353 aaKnown RBP13.1□□□□□ -0.31
PRPF40A-211ENST00000493468 NUBPLQ8TB37 319 aa13.1□□□□□ -0.31
PRPF40A-211ENST00000493468 TAS2R13Q9NYV9 303 aa13.1□□□□□ -0.31
PRPF40A-211ENST00000493468 TRPS1Q9UHF7 1281 aa13.1□□□□□ -0.31
PRPF40A-211ENST00000493468 FBXO5Q9UKT4 447 aa13.1□□□□□ -0.31
PRPF40A-211ENST00000493468 MAD1L1Q9Y6D9 718 aa13.1□□□□□ -0.31
PRPF40A-211ENST00000493468 MBD3L4A6NDZ8 208 aaPredicted RBP13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 MBD3L3A6NE82 208 aaPredicted RBP13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 MBD3L5A6NJ08 208 aaPredicted RBP13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 CD8B2A6NJW9 211 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 KDM4EB2RXH2 506 aaPredicted RBP13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 CYR61O00622 381 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 B3GALT2O43825 422 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 CTNSO60931 367 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 IFNA16P05015 189 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 BMP7P18075 431 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 CTSSP25774 331 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 GSTM2P28161 218 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 WNT3P56703 355 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 RCN2Q14257 317 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 EFTUD2Q15029 972 aaKnown RBP eCLIP13.09□□□□□ -0.312e-7■■■■□ 22.5
PRPF40A-211ENST00000493468 POU4F3Q15319 338 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 PIGGQ5H8A4 983 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 NXPE4Q6UWF7 544 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 SLC15A4Q8N697 577 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 ZNF321PQ8N8H1 164 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 FAM47BQ8NA70 645 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 TTLQ8NG68 377 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 MBD3L2Q8NHZ7 208 aaPredicted RBP13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 SLC2A12Q8TD20 617 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 MS4A6EQ96DS6 147 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 LINGO1Q96FE5 620 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 TSNARE1Q96NA8 513 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 QRFPRQ96P65 431 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 WDR83Q9BRX9 315 aaKnown RBP13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 TRIM54Q9BYV2 358 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 OR8D2Q9GZM6 311 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 CNIH4Q9P003 139 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 DYRK1BQ9Y463 629 aa13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 RAI1Q7Z5J4 1906 aaPredicted RBP13.09□□□□□ -0.31
PRPF40A-211ENST00000493468 SONP18583 2426 aaKnown RBP13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 C15orf38-AP3S2A0A0A6YYH1 394 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 SH3D21A4FU49 640 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 EEF1E1-BLOC1S5C9J1V9 151 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 SMAD7O15105 426 aaKnown RBP13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 EEF1E1O43324 174 aaKnown RBP13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 HAUS5O94927 633 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 ENO2P09104 434 aaPredicted RBP13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 MLNP12872 115 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 HNRNPH1P31943 449 aaKnown RBP13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 DUSP8Q13202 625 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 SERTAD2Q14140 314 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 RBBP5Q15291 538 aaKnown RBP13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 PAQR3Q6TCH7 311 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 LYPD8Q6UX82 237 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 RAD9BQ6WBX8 426 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 YTHDF3Q7Z739 585 aaKnown RBP13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 CLNKQ7Z7G1 428 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 TMPRSS11BQ86T26 416 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 KIAA1328Q86T90 577 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 CAND1Q86VP6 1230 aaKnown RBP13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 KLHDC8AQ8IYD2 350 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 VWA5B2Q8N398 1253 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 RASGEF1CQ8N431 466 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 C7orf57Q8NEG2 295 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 SLC22A8Q8TCC7 542 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 KIAA1191Q96A73 305 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 SPACA9Q96E40 222 aaPredicted RBP13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 TIMP4Q99727 224 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 FAM167BQ9BTA0 163 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 ALOXE3Q9BYJ1 711 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 PROK2Q9HC23 129 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 COPS7AQ9UBW8 275 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 DAPP1Q9UN19 280 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 ZKSCAN5Q9Y2L8 839 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 IKBKGQ9Y6K9 419 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 DSCAMO60469 2012 aa13.08□□□□□ -0.32
PRPF40A-211ENST00000493468 ANK3Q12955 4377 aaKnown RBP13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 LRIT2A6NDA9 550 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 C17orf105B2RV13 164 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 ERI3O43414 337 aaKnown RBP13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 CRLF1O75462 422 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 SAT1P21673 171 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 HPDP32754 393 aaPredicted RBP13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 TRPC1P48995 793 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 LIM2P55344 173 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 ASPHQ12797 758 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 STX4Q12846 297 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 ADPRMQ3LIE5 342 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 NHSL2Q5HYW2 709 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 GSTA5Q7RTV2 222 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 THOC6Q86W42 341 aaKnown RBP13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 TXLNBQ8N3L3 684 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 ZNF721Q8TF20 911 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 SREK1Q8WXA9 508 aaKnown RBP13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 SERINC2Q96SA4 455 aa13.07□□□□□ -0.32
PRPF40A-211ENST00000493468 SECISBP2Q96T21 854 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms