RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 NFAM1Q8NET5 270 aaPredicted RBP16.23■□□□□ 0.19
MDC1-206ENST00000489540 AGAP11Q8TF27 550 aa16.23■□□□□ 0.19
MDC1-206ENST00000489540 MRPL1Q9BYD6 325 aaKnown RBP16.23■□□□□ 0.19
MDC1-206ENST00000489540 RNF32Q9H0A6 362 aa16.23■□□□□ 0.19
MDC1-206ENST00000489540 ILKAPQ9H0C8 392 aaPredicted RBP16.23■□□□□ 0.19
MDC1-206ENST00000489540 WDR41Q9HAD4 459 aa16.23■□□□□ 0.19
MDC1-206ENST00000489540 VPS29Q9UBQ0 182 aa16.23■□□□□ 0.19
MDC1-206ENST00000489540 PPIEQ9UNP9 301 aaKnown RBP16.23■□□□□ 0.19
MDC1-206ENST00000489540 TGFBR3LH3BV60 316 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 UBFD1O14562 309 aaKnown RBP16.22■□□□□ 0.19
MDC1-206ENST00000489540 TMPRSS11DO60235 418 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 GUCY1B2O75343 617 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 SPAG7O75391 227 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 MYO1DO94832 1006 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 HNRNPH2P55795 449 aaKnown RBP16.22■□□□□ 0.19
MDC1-206ENST00000489540 ELAVL1Q15717 326 aaKnown RBP16.22■□□□□ 0.19
MDC1-206ENST00000489540 MEP1AQ16819 746 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 CCNYL2Q5T2Q4 361 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 LGI4Q8N135 537 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 AMER2Q8N7J2 671 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 B3GNT7Q8NFL0 401 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 TCP10LQ8TDR4 215 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 DAZLQ92904 295 aaKnown RBP16.22■□□□□ 0.19
MDC1-206ENST00000489540 ANKRD9Q96BM1 317 aaPredicted RBP16.22■□□□□ 0.19
MDC1-206ENST00000489540 FAM111AQ96PZ2 611 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 TRMOQ9BU70 441 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 ABI3Q9P2A4 366 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 CLCA3PQ9Y6N3 262 aa16.22■□□□□ 0.19
MDC1-206ENST00000489540 A0A1W2PR48 441 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 SERTM1A2A2V5 107 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 CDK2AP1O14519 115 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 LDB3O75112 727 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 GBAP04062 536 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 TNNI3P19429 210 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 MLLT10P55197 1068 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 TBL3Q12788 808 aaKnown RBP16.21■□□□□ 0.19
MDC1-206ENST00000489540 PCLAFQ15004 111 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 TCHHL1Q5QJ38 904 aaPredicted RBP16.21■□□□□ 0.19
MDC1-206ENST00000489540 ACER2Q5QJU3 275 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 CEP85LQ5SZL2 805 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 C18orf63Q68DL7 685 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 LRIG3Q6UXM1 1119 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 COMMD6Q7Z4G1 85 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 HOMEZQ8IX15 550 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 Q8NA96 180 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 SREK1Q8WXA9 508 aaKnown RBP16.21■□□□□ 0.19
MDC1-206ENST00000489540 CNDP1Q96KN2 507 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 PLA2G3Q9NZ20 509 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 SLC17A7Q9P2U7 560 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 TIMM22Q9Y584 194 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 BOD1L1Q8NFC6 3051 aa16.21■□□□□ 0.19
MDC1-206ENST00000489540 CTIFO43310 598 aaKnown RBP16.2■□□□□ 0.18
MDC1-206ENST00000489540 FGF17O60258 216 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 CRCPO75575 148 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 WDPCPO95876 746 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 NR2F6P10588 404 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 TPP2P29144 1249 aaPredicted RBP16.2■□□□□ 0.18
MDC1-206ENST00000489540 ALDH3A1P30838 453 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 CLCN2P51788 898 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 MAPK12P53778 367 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 IGLV3-21P80748 117 aaPredicted RBP16.2■□□□□ 0.18
MDC1-206ENST00000489540 GALNT1Q10472 559 aaPredicted RBP16.2■□□□□ 0.18
MDC1-206ENST00000489540 ZNF169Q14929 603 aaPredicted RBP16.2■□□□□ 0.18
MDC1-206ENST00000489540 INPP5JQ15735 1006 aaPredicted RBP16.2■□□□□ 0.18
MDC1-206ENST00000489540 CUZD1Q86UP6 607 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 RPS19BP1Q86WX3 136 aaKnown RBP16.2■□□□□ 0.18
MDC1-206ENST00000489540 MORN4Q8NDC4 146 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 OR14A16Q8NHC5 309 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 CPT1CQ8TCG5 803 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 CHTF18Q8WVB6 975 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 RBM18Q96H35 190 aaKnown RBP16.2■□□□□ 0.18
MDC1-206ENST00000489540 ZIM3Q96PE6 472 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 GATA5Q9BWX5 397 aaPredicted RBP16.2■□□□□ 0.18
MDC1-206ENST00000489540 DEFB126Q9BYW3 111 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 CSAG2Q9Y5P2 127 aa16.2■□□□□ 0.18
MDC1-206ENST00000489540 TRAV17A0A0B4J275 112 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 TYROBPO43914 113 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 GPR75O95800 540 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 COX7A2P14406 83 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 CREB1P16220 341 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 STT3AP46977 705 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 GPR143P51810 404 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 TRA2BP62995 288 aaKnown RBP16.19■□□□□ 0.18
MDC1-206ENST00000489540 FOLH1Q04609 750 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 CRLF3Q8IUI8 442 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 OR4N5Q8IXE1 308 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 KIF2BQ8N4N8 673 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 APCDD1LQ8NCL9 501 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 CATSPER1Q8NEC5 780 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 OR1N1Q8NGS0 311 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 PTPMT1Q8WUK0 201 aaPredicted RBP16.19■□□□□ 0.18
MDC1-206ENST00000489540 VMP1Q96GC9 406 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 DGAT2Q96PD7 388 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 KCNA7Q96RP8 456 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 HBEGFQ99075 208 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 PELOQ9BRX2 385 aaKnown RBP16.19■□□□□ 0.18
MDC1-206ENST00000489540 ACPTQ9BZG2 426 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 TRIM4Q9C037 500 aa16.19■□□□□ 0.18
MDC1-206ENST00000489540 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.19■□□□□ 0.18
MDC1-206ENST00000489540 CDCP1Q9H5V8 836 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms