RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CNTN1Q12860 1018 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 GPR50Q13585 617 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 PDE7AQ13946 482 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 CEACAM7Q14002 265 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 MAPK11Q15759 364 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 STXBP2Q15833 593 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 EIPR1Q53HC9 387 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 SPANXN4Q5MJ08 99 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 ZNF776Q68DI1 518 aaPredicted RBP2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 ALKBH5Q6P6C2 394 aaKnown RBP2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 CEACAM19Q7Z692 300 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 FAM131BQ86XD5 332 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 RNF130Q86XS8 419 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 SERPINA12Q8IW75 414 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 SLC22A15Q8IZD6 547 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 CCDC185Q8N715 623 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 SUMF1Q8NBK3 374 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 RNF149Q8NC42 400 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 PSMA8Q8TAA3 256 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 SMPDL3AQ92484 453 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 ATXN7L3BQ96GX2 97 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 PCDHB18PQ96TA0 734 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 ATP6V0BQ99437 205 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 DDX50Q9BQ39 737 aaKnown RBP2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 CCM2Q9BSQ5 444 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 NTMT1Q9BV86 223 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 PAPOLGQ9BWT3 736 aaKnown RBP2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 NAPBQ9H115 298 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 PNNQ9H307 717 aaKnown RBP2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 ZDHHC6Q9H6R6 413 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 DBF4Q9UBU7 674 aaPredicted RBP2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 PILRAQ9UKJ1 303 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 PLCL2Q9UPR0 1127 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 EXOC6BQ9Y2D4 811 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 KNSTRNQ9Y448 316 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 ETV7Q9Y603 341 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 TRIOBPQ9H2D6 2365 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 TMEM129A0AVI4 362 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 NKX6-3A6NJ46 265 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 SHISA9B4DS77 424 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 LMO7DNF2Z398 122 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 OGTO15294 1046 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 P2RX6O15547 441 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 PSMD3O43242 534 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 SYT7O43581 403 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 MT-ND3P03897 115 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 CHRNGP07510 517 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 NUDT17P0C025 328 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 SKILP12757 684 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 P4HA1P13674 534 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 MYOGP15173 224 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 B4GALT1P15291 398 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 C4BPBP20851 252 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 EDNRAP25101 427 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 ACKR3P25106 362 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 GIFP27352 417 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 OR1D2P34982 312 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 HLCSP50747 726 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 ARF5P84085 180 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 DHODHQ02127 395 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 LCP2Q13094 533 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 CBX3Q13185 183 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 FAM189A2Q15884 450 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 PLPP4Q5VZY2 271 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 VITQ6UXI7 678 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 BAIAP2L2Q6UXY1 529 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 GDPGP1Q6ZNW5 385 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 Q6ZVQ6 151 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 RFPL4BQ6ZWI9 263 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 DND1Q8IYX4 353 aaKnown RBP2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 SLC43A2Q8N370 569 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 TRPV3Q8NET8 790 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 OR13C5Q8NGS8 318 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 RHOXF1Q8NHV9 184 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 RPLP0P6Q8NHW5 317 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 CHURC1Q8WUH1 139 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 ATP6V0A1Q93050 837 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 ULK4Q96C45 1275 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 CNRIP1Q96F85 164 aaPredicted RBP2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 SERAC1Q96JX3 654 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 CNOT6LQ96LI5 555 aaKnown RBP2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 GUCD1Q96NT3 240 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 PRAM1Q96QH2 718 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 OVOL2Q9BRP0 275 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 UBAC1Q9BSL1 405 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 LRRC2Q9BYS8 371 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 TSPYL1Q9H0U9 437 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 FNDC4Q9H6D8 234 aaPredicted RBP2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 DBNDD1Q9H9R9 158 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 C3orf14Q9HBI5 128 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 COMMD8Q9NX08 183 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 CYP39A1Q9NYL5 469 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 AKAP7Q9P0M2 348 aaPredicted RBP2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 B4GALT7Q9UBV7 327 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 APPL1Q9UKG1 709 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 FOXA2Q9Y261 457 aaPredicted RBP2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 ZNF256Q9Y2P7 627 aaPredicted RBP2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 RNF123Q5XPI4 1314 aa2.41□□□□□ -2.02
CCDC88A-212ENST00000474059 DHX29Q7Z478 1369 aaKnown RBP2.4□□□□□ -2.02
CCDC88A-212ENST00000474059 ATP6AP2A0A1C7CYW4 349 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms