RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 OR8D2Q9GZM6 311 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 PRM3Q9NNZ6 103 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 PLSCR2Q9NRY7 297 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 DEPPQ9NTK1 212 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 ADGRE2Q9UHX3 823 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 ACOT9Q9Y305 439 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 CACNA1CQ13936 2221 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 A0A087X1B8 175 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 A0A1B0GTH9 108 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 CCDC189A1A4V9 331 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 SYCE1LA8MT33 242 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 C17orf105B2RV13 164 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 WWP2O00308 870 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 CDC40O60508 579 aaKnown RBP eCLIP15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 OR6B1O95007 311 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 SNRPB2P08579 225 aaKnown RBP15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 MTHFD2P13995 350 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 EPB42P16452 691 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 TNNI3P19429 210 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 CPN2P22792 545 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 SOX3P41225 446 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 SSR2P43308 183 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 HK2P52789 917 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 DEPDC1Q5TB30 811 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 KHDRBS2Q5VWX1 349 aaKnown RBP15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 IL20RBQ6UXL0 311 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 SYT10Q6XYQ8 523 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 C3P1Q6ZMU1 363 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 ZNF321PQ8N8H1 164 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 RHEBL1Q8TAI7 183 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 SLC2A12Q8TD20 617 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 ANKRD9Q96BM1 317 aaPredicted RBP15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 PPT2Q9UMR5 302 aa15.38■□□□□ 0.05
CCDC28B-204ENST00000469003 C19orf84I3L1E1 186 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 SH3BGRLO75368 114 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 TPOP07202 933 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 RNF4P78317 190 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 IGLV3-21P80748 117 aaPredicted RBP15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 ID2Q02363 134 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 FAM83EQ2M2I3 478 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 OR4C11Q6IEV9 310 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 CD163Q86VB7 1156 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 CENPLQ8N0S6 344 aaPredicted RBP15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 OR52N2Q8NGI0 321 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 OR5L2Q8NGL0 311 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 KCTD4Q8WVF5 259 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 OR51B5Q9H339 312 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 TSC22D4Q9Y3Q8 395 aa15.37■□□□□ 0.05
CCDC28B-204ENST00000469003 PKDREJQ9NTG1 2253 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 PINLYPA6NC86 204 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 SAP18O00422 153 aaKnown RBP15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 ETHE1O95571 254 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 C2P06681 752 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 COX7A2P14406 83 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 PIK3CBP42338 1070 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 RAP1GDS1P52306 607 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 PPIAP62937 165 aaKnown RBP15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 IRF9Q00978 393 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 SLAMF1Q13291 335 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 DDX39BQ13838 428 aaKnown RBP15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 SETDB1Q15047 1291 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 MROH9Q5TGP6 573 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 LIPJQ5W064 366 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 ARHGAP11AQ6P4F7 1023 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 PAOXQ6QHF9 649 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 RTL4Q6ZR62 310 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 RGS9BPQ6ZS82 235 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 C17orf53Q8N3J3 647 aaPredicted RBP15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 TEX9Q8N6V9 391 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 GOLM1Q8NBJ4 401 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 OR2M7Q8NG81 312 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 HUS1BQ8NHY5 278 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 ZNF721Q8TF20 911 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 SREK1Q8WXA9 508 aaKnown RBP15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 RGMAQ96B86 450 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 CENPKQ9BS16 269 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 SORBS1Q9BX66 1292 aaKnown RBP15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 TRIM8Q9BZR9 551 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 DMRT3Q9NQL9 472 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 SNX15Q9NRS6 342 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 MS4A12Q9NXJ0 267 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 COQ3Q9NZJ6 369 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 COPS7AQ9UBW8 275 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 ANGPTL3Q9Y5C1 460 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 PCDHGA11Q9Y5H2 935 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 CCDC168Q8NDH2 2452 aa15.36■□□□□ 0.05
CCDC28B-204ENST00000469003 HMX2A2RU54 273 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 ACOT7O00154 380 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 FGF17O60258 216 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 GFAPP14136 432 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 KIR3DL1P43629 444 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 STT3AP46977 705 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 ARFIP1P53367 373 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 ALDH18A1P54886 795 aaKnown RBP15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 TNFRSF17Q02223 184 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 PLGLB1Q02325 96 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 BIKQ13323 160 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 ACAP2Q15057 778 aa15.35■□□□□ 0.05
CCDC28B-204ENST00000469003 PFKFB4Q16877 469 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms