RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MS4A6EQ96DS6 147 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 SMIM10Q96HG1 83 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 PKNOX2Q96KN3 472 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 TAAR6Q96RI8 345 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 MDFIQ99750 246 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 MECRQ9BV79 373 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 MS4A8Q9BY19 250 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 AICDAQ9GZX7 198 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 LHPPQ9H008 270 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 CXXC4Q9H2H0 198 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 KLHL31Q9H511 634 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 MKKSQ9NPJ1 570 aaPredicted RBP11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 DMRT3Q9NQL9 472 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 C14orf105Q9NVL8 296 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 TRPC4Q9UBN4 977 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 C3orf18Q9UK00 162 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 ZNF225Q9UK10 706 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 NAALAD2Q9Y3Q0 740 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 PCDHGB6Q9Y5F9 930 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 HCFC1P51610 2035 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 A0A1W2PQ72 361 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 IDSB3KWA1 339 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 C4orf51C9J302 202 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 H3BQF6 201 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 ERI3O43414 337 aaKnown RBP11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 GALR3O60755 368 aaPredicted RBP11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 OR4F21O95013 312 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 HPP00738 406 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 BPGMP07738 259 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 ESRRAP11474 423 aaPredicted RBP11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 SERPINB4P48594 390 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 EMP2P54851 167 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 RAB8AP61006 207 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 MAGOHP61326 146 aaKnown RBP11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 PPP2R2AP63151 447 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 DDX39BQ13838 428 aaKnown RBP11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 DEFB134Q4QY38 66 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 C10orf62Q5T681 223 aaPredicted RBP11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 FRG2Q64ET8 278 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 TTC19Q6DKK2 380 aaPredicted RBP11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 GPRIN3Q6ZVF9 776 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 LAPTM4BQ86VI4 370 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 OR2L5Q8NG80 312 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 AGAP11Q8TF27 550 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 CMTM7Q96FZ5 175 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 FRG2BQ96QU4 278 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 LMF1Q96S06 567 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 MTERF1Q99551 399 aaKnown RBP11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 GATA5Q9BWX5 397 aaPredicted RBP11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 REXO4Q9GZR2 422 aaKnown RBP11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 MID1IP1Q9NPA3 183 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 KCNK9Q9NPC2 374 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 SH3BGRL2Q9UJC5 107 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 PPT2Q9UMR5 302 aa11.18□□□□□ -0.62
SQSTM1-206ENST00000466342 ZNF860A6NHJ4 632 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 MAGEB17A8MXT2 336 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 SGK494L7N484 410 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 FOXE1O00358 373 aaPredicted RBP11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 UBFD1O14562 309 aaKnown RBP11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 FFAR3O14843 346 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 GPR42O15529 346 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 NPHS1O60500 1241 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 RDH16O75452 317 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 ESRRBO95718 433 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 B3GALT4O96024 378 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 TGFB1P01137 390 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 ENO1P06733 434 aaKnown RBP11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 DHRS4L1P0CG22 281 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 ACPPP15309 386 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 FOSL1P15407 271 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 DNAJA1P31689 397 aaKnown RBP11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 IST1P53990 364 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 CASP6P55212 293 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 RPS13P62277 151 aaKnown RBP11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 RBPJQ06330 500 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 TGM3Q08188 693 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 IFT88Q13099 833 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 MPP2Q14168 576 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 SYT16Q17RD7 645 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 TMEM35AQ53FP2 167 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 DEPDC1Q5TB30 811 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 KHDRBS2Q5VWX1 349 aaKnown RBP11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 TRIM40Q6P9F5 258 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 MEX3BQ6ZN04 569 aaKnown RBP11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 CHSY3Q70JA7 882 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 PRSS58Q8IYP2 241 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 RNF175Q8N4F7 328 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 CDYL2Q8N8U2 506 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 SRFBP1Q8NEF9 429 aaKnown RBP11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 ADAMTS18Q8TE60 1221 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 SREK1Q8WXA9 508 aaKnown RBP11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 ARL8AQ96BM9 186 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 F2RL3Q96RI0 385 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 FOXC2Q99958 501 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 SH3GL2Q99962 352 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 TREX2Q9BQ50 279 aaPredicted RBP11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 TRMOQ9BU70 441 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 YIPF2Q9BWQ6 316 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 ELOVL6Q9H5J4 265 aa11.17□□□□□ -0.62
SQSTM1-206ENST00000466342 PRM3Q9NNZ6 103 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms