RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 CUL3Q13618 768 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 RASA2Q15283 850 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 GGTA1PQ4G0N0 100 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 CFAP157Q5JU67 520 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 EMBQ6PCB8 327 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 ZYG11AQ6WRX3 759 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 SRRM1Q8IYB3 904 aaKnown RBP17.45■□□□□ 0.38
USP39-209ENST00000458268 GALNT11Q8NCW6 608 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 NFAM1Q8NET5 270 aaPredicted RBP17.45■□□□□ 0.38
USP39-209ENST00000458268 METTL6Q8TCB7 284 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 ELP5Q8TE02 316 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 GRHL3Q8TE85 626 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 HAS2Q92819 552 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 DGAT2Q96PD7 388 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 KCNA7Q96RP8 456 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 PARD6BQ9BYG5 372 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 SHCBP1LQ9BZQ2 653 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 LIN28AQ9H9Z2 209 aaKnown RBP17.45■□□□□ 0.38
USP39-209ENST00000458268 WDR41Q9HAD4 459 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 TSC22D4Q9Y3Q8 395 aa17.45■□□□□ 0.38
USP39-209ENST00000458268 C17orf105B2RV13 164 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 MANBAO00462 879 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 PLIN3O60664 434 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 CRCPO75575 148 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 NR2F6P10588 404 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 TPP2P29144 1249 aaPredicted RBP17.44■□□□□ 0.38
USP39-209ENST00000458268 PMP22Q01453 160 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 FOLH1Q04609 750 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 TUBA3CQ13748 450 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 ELOAQ14241 798 aaKnown RBP17.44■□□□□ 0.38
USP39-209ENST00000458268 OR1C1Q15619 314 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 ELAVL1Q15717 326 aaKnown RBP17.44■□□□□ 0.38
USP39-209ENST00000458268 CCDC153Q494R4 210 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 ZNF766Q5HY98 468 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 CCNYL2Q5T2Q4 361 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 WDR93Q6P2C0 686 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 TUBA3EQ6PEY2 450 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 SCIMPQ6UWF3 145 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 TMEM132CQ8N3T6 1108 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 ZCCHC7Q8N3Z6 543 aaKnown RBP17.44■□□□□ 0.38
USP39-209ENST00000458268 PRR7Q8TB68 274 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 PPWD1Q96BP3 646 aaKnown RBP17.44■□□□□ 0.38
USP39-209ENST00000458268 VMP1Q96GC9 406 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 SIGLEC12Q96PQ1 595 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 C1QTNF3Q9BXJ4 246 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 HES7Q9BYE0 225 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 MID1IP1Q9NPA3 183 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 MS4A12Q9NXJ0 267 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 AHSPQ9NZD4 102 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 ZNF225Q9UK10 706 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 TIMM22Q9Y584 194 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 CLDN16Q9Y5I7 305 aa17.44■□□□□ 0.38
USP39-209ENST00000458268 RP1L1Q8IWN7 2480 aaPredicted RBP17.44■□□□□ 0.38
USP39-209ENST00000458268 MYO18BQ8IUG5 2567 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 SVILO95425 2214 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 A0A0A6YYD5 115 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 WASHC1A8K0Z3 465 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 G3V2L1 256 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 OR10H2O60403 315 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 PRAMEF2O60811 474 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 SPAG7O75391 227 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 MLYCDO95822 493 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 AIFM1O95831 613 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 KRT6AP02538 564 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 KRT6BP04259 564 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 COX7A2P14406 83 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 KRT6CP48668 564 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 HTR6P50406 440 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 LCP2Q13094 533 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 SERTAD2Q14140 314 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 EIF2S3LQ2VIR3 472 aaKnown RBP17.43■□□□□ 0.38
USP39-209ENST00000458268 SPINK14Q6IE38 97 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 H3F3CQ6NXT2 135 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 PAGE2Q7Z2X7 111 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 CNPY4Q8N129 248 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 DAZLQ92904 295 aaKnown RBP17.43■□□□□ 0.38
USP39-209ENST00000458268 UCN3Q969E3 161 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 ANKRD9Q96BM1 317 aaPredicted RBP17.43■□□□□ 0.38
USP39-209ENST00000458268 CCDC126Q96EE4 140 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 L3HYPDHQ96EM0 354 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 C5orf34Q96MH7 638 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 ZNF382Q96SR6 550 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 ZNF717Q9BY31 904 aaPredicted RBP17.43■□□□□ 0.38
USP39-209ENST00000458268 GSTO2Q9H4Y5 243 aa17.43■□□□□ 0.38
USP39-209ENST00000458268 TEX10Q9NXF1 929 aaPredicted RBP17.43■□□□□ 0.38
USP39-209ENST00000458268 ESPL1Q14674 2120 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 A0A1W2PR48 441 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 FCHO1O14526 889 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 SEMA3DO95025 777 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 NUDT17P0C025 328 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 CPA3P15088 417 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 CRHR1P34998 444 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 CD96P40200 585 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 NAGLUP54802 743 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 BTKQ06187 659 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 KRT71Q3SY84 523 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 C16orf47Q6ZP98 133 aaPredicted RBP17.42■□□□□ 0.38
USP39-209ENST00000458268 COMMD6Q7Z4G1 85 aa17.42■□□□□ 0.38
USP39-209ENST00000458268 C1orf52Q8N6N3 182 aaKnown RBP17.42■□□□□ 0.38
USP39-209ENST00000458268 ZNF321PQ8N8H1 164 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms