RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 RGS21Q2M5E4 152 aa11.41□□□□□ -0.58
SMPD4-213ENST00000454468 SMU1Q2TAY7 513 aa11.41□□□□□ -0.58
SMPD4-213ENST00000454468 METTL2BQ6P1Q9 378 aaKnown RBP11.41□□□□□ -0.58
SMPD4-213ENST00000454468 BORAQ6PGQ7 559 aa11.41□□□□□ -0.58
SMPD4-213ENST00000454468 C16orf62Q7Z3J2 963 aa11.41□□□□□ -0.58
SMPD4-213ENST00000454468 DEFB119Q8N690 84 aa11.41□□□□□ -0.58
SMPD4-213ENST00000454468 DNASE1L2Q92874 299 aa11.41□□□□□ -0.58
SMPD4-213ENST00000454468 RGMAQ96B86 450 aa11.41□□□□□ -0.58
SMPD4-213ENST00000454468 COQ10AQ96MF6 247 aa11.41□□□□□ -0.58
SMPD4-213ENST00000454468 KCNS3Q9BQ31 491 aa11.41□□□□□ -0.58
SMPD4-213ENST00000454468 YTHDF1Q9BYJ9 559 aaKnown RBP11.41□□□□□ -0.58
SMPD4-213ENST00000454468 NDUFAF4Q9P032 175 aa11.41□□□□□ -0.58
SMPD4-213ENST00000454468 LYVE1Q9Y5Y7 322 aa11.41□□□□□ -0.58
SMPD4-213ENST00000454468 KRBA1A5PL33 1030 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 LINC01565O15544 149 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 UGDHO60701 494 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 CLPXO76031 633 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 IGFBP4P22692 258 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 RPL3P39023 403 aaKnown RBP11.4□□□□□ -0.58
SMPD4-213ENST00000454468 UBE3AQ05086 875 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 NDUFAF5Q5TEU4 345 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 REEP3Q6NUK4 255 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 TMEM107Q6UX40 140 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 NEK10Q6ZWH5 1172 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 SLC9B2Q86UD5 537 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 NRSN1Q8IZ57 195 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 OR13F1Q8NGS4 319 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 CLIP3Q96DZ5 547 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 SLC35G5Q96KT7 338 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 ART5Q96L15 291 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 RBCK1Q9BYM8 510 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 BRF2Q9HAW0 419 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 NEUROG3Q9Y4Z2 214 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 STK25O00506 426 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 CAPN5O15484 640 aaPredicted RBP11.4□□□□□ -0.58
SMPD4-213ENST00000454468 UGT2B17O75795 530 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 HOXD12P35452 270 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 MVKQ03426 396 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 SLC9A5Q14940 896 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 CCDC85BQ15834 202 aaPredicted RBP11.4□□□□□ -0.58
SMPD4-213ENST00000454468 COLEC12Q5KU26 742 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 DEPDC1Q5TB30 811 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 PARM1Q6UWI2 310 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 CALHM3Q86XJ0 350 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 ABHD11Q8NFV4 315 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 OR52N2Q8NGI0 321 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 ZBED6CLQ96FA7 236 aaPredicted RBP11.4□□□□□ -0.58
SMPD4-213ENST00000454468 DHRS1Q96LJ7 313 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 QRFPRQ96P65 431 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 ARPC5LQ9BPX5 153 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 CFHR5Q9BXR6 569 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 PBX4Q9BYU1 374 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 CRISPLD2Q9H0B8 497 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 POLR2J3Q9H1A7 115 aaKnown RBP11.4□□□□□ -0.58
SMPD4-213ENST00000454468 EHD1Q9H4M9 534 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 RNF167Q9H6Y7 350 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 DKK3Q9UBP4 350 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 RABL2BQ9UNT1 228 aa11.4□□□□□ -0.58
SMPD4-213ENST00000454468 TRBV5-3A0A0A0MS03 114 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 KMOO15229 486 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 SCN2BO60939 215 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 HSD3B1P14060 373 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 HOXB2P14652 356 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 AZGP1P25311 298 aaKnown RBP11.39□□□□□ -0.59
SMPD4-213ENST00000454468 HSD3B2P26439 372 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 PTPN6P29350 595 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 MAD2L1BPQ15013 274 aaPredicted RBP11.39□□□□□ -0.59
SMPD4-213ENST00000454468 TOR1AIP1Q5JTV8 583 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 THOC7Q6I9Y2 204 aaKnown RBP11.39□□□□□ -0.59
SMPD4-213ENST00000454468 PDZD3Q86UT5 571 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 KRT73Q86Y46 540 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 TBC1D19Q8N5T2 526 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 GEMIN6Q8WXD5 167 aaKnown RBP11.39□□□□□ -0.59
SMPD4-213ENST00000454468 ZNF300Q96RE9 604 aaPredicted RBP11.39□□□□□ -0.59
SMPD4-213ENST00000454468 BHLHE41Q9C0J9 482 aaPredicted RBP11.39□□□□□ -0.59
SMPD4-213ENST00000454468 KLHL31Q9H511 634 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 HMG20AQ9NP66 347 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 ADAP2Q9NPF8 381 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 NDRG2Q9UN36 371 aaKnown RBP11.39□□□□□ -0.59
SMPD4-213ENST00000454468 CORINQ9Y5Q5 1042 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 KPNA4O00629 521 aaPredicted RBP11.39□□□□□ -0.59
SMPD4-213ENST00000454468 HTRA4P83105 476 aaPredicted RBP11.39□□□□□ -0.59
SMPD4-213ENST00000454468 USP51Q70EK9 711 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 PARGQ86W56 976 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 TCEANCQ8N8B7 351 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 TBC1D15Q8TC07 691 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 HMGB4Q8WW32 186 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 MYDGFQ969H8 173 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 SIPA1Q96FS4 1042 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 ZNF607Q96SK3 696 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 CSF3RQ99062 836 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 MKRN2Q9H000 416 aaKnown RBP11.39□□□□□ -0.59
SMPD4-213ENST00000454468 NKX2-4Q9H2Z4 354 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 OR51I1Q9H343 314 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 CLN6Q9NWW5 311 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 SAGE1Q9NXZ1 904 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 TAAR2Q9P1P5 351 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 RNF6Q9Y252 685 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 ANAPC1Q9H1A4 1944 aa11.39□□□□□ -0.59
SMPD4-213ENST00000454468 RNASET2O00584 256 aaKnown RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms