RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SCN3AQ9NY46 2000 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 TRGV5A0A0B4J1U4 118 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 PINLYPA6NC86 204 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 TGFBR3LH3BV60 316 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 CCDC166P0CW27 439 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 GLI4P10075 376 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 CD99P14209 185 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 CPN2P22792 545 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 CERS1P27544 350 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 SERPINB1P30740 379 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 DNAJA1P31689 397 aaKnown RBP12.3□□□□□ -0.44
HMGB3-204ENST00000448905 MAGEA5P43359 124 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 FOLH1Q04609 750 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 ZNF460Q14592 562 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 TBCCQ15814 346 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 C18orf21Q32NC0 220 aaPredicted RBP12.3□□□□□ -0.44
HMGB3-204ENST00000448905 ARSKQ6UWY0 536 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 KLHL7Q8IXQ5 586 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 DND1Q8IYX4 353 aaKnown RBP12.3□□□□□ -0.44
HMGB3-204ENST00000448905 RPRMLQ8N4K4 120 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 ACOT4Q8N9L9 421 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 SLC22A8Q8TCC7 542 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 SLC2A12Q8TD20 617 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 WDR34Q96EX3 536 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 SENP5Q96HI0 755 aaPredicted RBP12.3□□□□□ -0.44
HMGB3-204ENST00000448905 ART5Q96L15 291 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 PWWP2AQ96N64 755 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 DGAT2Q96PD7 388 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 DNAJB12Q9NXW2 375 aaKnown RBP12.3□□□□□ -0.44
HMGB3-204ENST00000448905 CNIH4Q9P003 139 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 B4GALT7Q9UBV7 327 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 ADGRE2Q9UHX3 823 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 BOKQ9UMX3 212 aaPredicted RBP12.3□□□□□ -0.44
HMGB3-204ENST00000448905 CLDN16Q9Y5I7 305 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.3□□□□□ -0.44
HMGB3-204ENST00000448905 MED13LQ71F56 2210 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 SCN2AQ99250 2005 aa12.3□□□□□ -0.44
HMGB3-204ENST00000448905 TACC2O95359 2948 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 IQANK1A0A1B0GTG1 560 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 MYOCOSA0A1B0GUC4 107 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 FAM221AA4D161 298 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 HSPB2A8KAH6 182 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 TAPBPO15533 448 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 CCNT2O60583 730 aaKnown RBP12.29□□□□□ -0.44
HMGB3-204ENST00000448905 DIAPH2O60879 1101 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 LDB3O75112 727 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 STMN1P16949 149 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 HIST1H1TP22492 207 aaPredicted RBP12.29□□□□□ -0.44
HMGB3-204ENST00000448905 ATP5A1P25705 553 aaKnown RBP12.29□□□□□ -0.44
HMGB3-204ENST00000448905 SERPINB3P29508 390 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 CASP2P42575 452 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 MSH2P43246 934 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 KIR2DL3P43628 341 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 HSPA7P48741 367 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 PPP2R2AP63151 447 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 KCNJ2P63252 427 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 ASPHQ12797 758 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 CHIT1Q13231 466 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 SF3B4Q15427 424 aaKnown RBP eCLIP12.29□□□□□ -0.44
HMGB3-204ENST00000448905 HSPB2Q16082 182 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 KRTAP21-3Q3LHN1 58 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 LIX1Q8N485 282 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 BBOF1Q8ND07 529 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 STAG3L4Q8TBR4 150 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 PYROXD1Q8WU10 500 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 SREK1Q8WXA9 508 aaKnown RBP12.29□□□□□ -0.44
HMGB3-204ENST00000448905 TANKQ92844 425 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 NINJ1Q92982 152 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 CMTM7Q96FZ5 175 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 CSF3RQ99062 836 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 POLDIP3Q9BY77 421 aaKnown RBP12.29□□□□□ -0.44
HMGB3-204ENST00000448905 ZFP64Q9NPA5 681 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 PCDHGB3Q9Y5G1 929 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 NCOA6Q14686 2063 aaPredicted RBP12.29□□□□□ -0.44
HMGB3-204ENST00000448905 HEATR5BQ9P2D3 2071 aa12.29□□□□□ -0.44
HMGB3-204ENST00000448905 A0A0G2JNJ9 132 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 SYT5O00445 386 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 PAFAH1B1P43034 410 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 STT3AP46977 705 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 DNASE1L1P49184 302 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 FOXO1Q12778 655 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 SLAMF1Q13291 335 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 C1orf185Q5T7R7 199 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 RIPPLY2Q5TAB7 128 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 OR4C11Q6IEV9 310 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 MED27Q6P2C8 311 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 VN1R5Q7Z5H4 357 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 WDR53Q7Z5U6 358 aaPredicted RBP12.28□□□□□ -0.44
HMGB3-204ENST00000448905 ZBED8Q8IZ13 594 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 FBXW8Q8N3Y1 598 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 SPATA6LQ8N4H0 392 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 GOT1L1Q8NHS2 421 aaPredicted RBP12.28□□□□□ -0.44
HMGB3-204ENST00000448905 NUBPLQ8TB37 319 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 RGMAQ96B86 450 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 CAPZA3Q96KX2 299 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 FOXC2Q99958 501 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 MAPKAP1Q9BPZ7 522 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 CD244Q9BZW8 370 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 RPF2Q9H7B2 306 aaKnown RBP12.28□□□□□ -0.44
HMGB3-204ENST00000448905 ACKR4Q9NPB9 350 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms