RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 FGFBP3Q8TAT2 258 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 RNASE8Q8TDE3 154 aaKnown RBP3.81□□□□□ -1.8
VPS29-202ENST00000447578 LRRC8CQ8TDW0 803 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 DNAJC19Q96DA6 116 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 TMEM19Q96HH6 336 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 CAPZA3Q96KX2 299 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 C17orf62Q9BQA9 187 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 FGFBP2Q9BYJ0 223 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 MIS12Q9H081 205 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 S1PR5Q9H228 398 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 SYTL2Q9HCH5 934 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 KCNMB3Q9NPA1 279 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 SIX4Q9UIU6 781 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 SAR1BQ9Y6B6 198 aa3.81□□□□□ -1.8
VPS29-202ENST00000447578 DOCK7Q96N67 2140 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 ABCB11O95342 1321 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 A0A0G2JNG1 304 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 A0A1W2PRB8 838 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 CLRN2A0PK11 232 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 FAM149AA5PLN7 773 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 ERICH4A6NGS2 130 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 TMEM150CB9EJG8 249 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 TCP10L2B9ZVM9 353 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 PRSS46E5RG02 174 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 PLOD2O00469 737 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 GAPDHSO14556 408 aaPredicted RBP3.8□□□□□ -1.8
VPS29-202ENST00000447578 NDC80O14777 642 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 CALUO43852 315 aaPredicted RBP3.8□□□□□ -1.8
VPS29-202ENST00000447578 RNASEH1O60930 286 aaKnown RBP3.8□□□□□ -1.8
VPS29-202ENST00000447578 HSF2BPO75031 334 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 IGLV2-11P01706 119 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 ABHD2P08910 425 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 GHRP10912 638 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 ETS1P14921 441 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 HNRNPH3P31942 346 aaKnown RBP3.8□□□□□ -1.8
VPS29-202ENST00000447578 EPS15P42566 896 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 PDX1P52945 283 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 VSNL1P62760 191 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 CX3CL1P78423 397 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 HTD2P86397 168 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 GALK2Q01415 458 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 SLC34A1Q06495 639 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 C2orf54Q08AI8 447 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 RASGEF1BQ0VAM2 473 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 GIT2Q14161 759 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 KIR2DS5Q14953 304 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 UGP2Q16851 508 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 MRGPRG-AS1Q2M3A8 158 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 KIF19Q2TAC6 998 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 ZCWPW2Q504Y3 356 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 BEND6Q5SZJ8 279 aaPredicted RBP3.8□□□□□ -1.8
VPS29-202ENST00000447578 FAM171BQ6P995 826 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 MEX3BQ6ZN04 569 aaKnown RBP3.8□□□□□ -1.8
VPS29-202ENST00000447578 ADCK1Q86TW2 530 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 SFR1Q86XK3 245 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 CATSPER3Q86XQ3 398 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 CROCCP3Q8IVE0 287 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 GPALPP1Q8IXQ4 340 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 SPATA22Q8NHS9 363 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 FAM216AQ8WUB2 273 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 SCFD1Q8WVM8 642 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 PYCR2Q96C36 320 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 ABHD8Q96I13 439 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 SGK494Q96LW2 274 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 MBOAT7Q96N66 472 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 TSGA13Q96PP4 275 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 ALS2CR12Q96Q35 445 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 NODALQ96S42 347 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 PKP2Q99959 881 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 ARRDC1-AS1Q9H2J1 176 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 Q9H8V8 135 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 LIN28AQ9H9Z2 209 aaKnown RBP3.8□□□□□ -1.8
VPS29-202ENST00000447578 UBTD1Q9HAC8 227 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 SDF2L1Q9HCN8 221 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 TCF7L2Q9NQB0 619 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 PRMT8Q9NR22 394 aaPredicted RBP3.8□□□□□ -1.8
VPS29-202ENST00000447578 PNPLA3Q9NST1 481 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 TAS2R3Q9NYW6 316 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.8□□□□□ -1.8
VPS29-202ENST00000447578 PTTG2Q9NZH5 202 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 ZNF224Q9NZL3 707 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 TMOD2Q9NZR1 351 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 DAPK2Q9UIK4 370 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 CCPG1Q9ULG6 757 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 LRRC37AA6NMS7 1700 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 LTBP1Q14766 1721 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 QSER1Q2KHR3 1735 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 KIAA1217Q5T5P2 1943 aa3.8□□□□□ -1.8
VPS29-202ENST00000447578 UBR3Q6ZT12 1888 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 A0A0G2JPF8 293 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 TRBV2A0A0J9YWF9 115 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 RGSL1A5PLK6 1076 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 C5orf60A6NFR6 353 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 RSPH10B2B2RC85 870 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 HNRNPCL3B7ZW38 293 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 E9PI62 339 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 H3BQF6 201 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 CETN3O15182 167 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 MSH4O15457 936 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 CHMP2AO43633 222 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms