RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 GPR45Q9Y5Y3 372 aa14.86□□□□□ -0.03
USP40-206ENST00000443711 AKAP13Q12802 2813 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 GLOD5A6NK44 160 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 TERTO14746 1132 aaKnown RBP14.85□□□□□ -0.03
USP40-206ENST00000443711 PGRMC2O15173 223 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 AKAP10O43572 662 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 PRMT3O60678 531 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 CTNSO60931 367 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 HEXBP07686 556 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 CYC1P08574 325 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 DDX5P17844 614 aaKnown RBP14.85□□□□□ -0.03
USP40-206ENST00000443711 DDCP20711 480 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 PRPS1L1P21108 318 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 PTPN4P29074 926 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 PPP2R1BP30154 601 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 HPCAL1P37235 193 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 RPL3P39023 403 aaKnown RBP14.85□□□□□ -0.03
USP40-206ENST00000443711 FOLR3P41439 243 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 HNRNPFP52597 415 aaKnown RBP14.85□□□□□ -0.03
USP40-206ENST00000443711 EMP2P54851 167 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 MC1RQ01726 317 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 ACTN3Q08043 901 aaPredicted RBP14.85□□□□□ -0.03
USP40-206ENST00000443711 PTGR1Q14914 329 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 PDCD4Q53EL6 469 aaKnown RBP14.85□□□□□ -0.03
USP40-206ENST00000443711 R3HCC1LQ7Z5L2 792 aaKnown RBP14.85□□□□□ -0.03
USP40-206ENST00000443711 CLNKQ7Z7G1 428 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 LAPTM4BQ86VI4 370 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 ZNF248Q8NDW4 579 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 TMEM52Q8NDY8 209 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 PLPP5Q8NEB5 264 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 C7orf57Q8NEG2 295 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 OR2Y1Q8NGV0 311 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 SNIP1Q8TAD8 396 aaKnown RBP14.85□□□□□ -0.03
USP40-206ENST00000443711 STARD8Q92502 1023 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 MTERF3Q96E29 417 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 MARK4Q96L34 752 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 CATSPER2Q96P56 530 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 SPSB2Q99619 263 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 DPY30Q9C005 99 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 BRINP2Q9C0B6 783 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 REEP4Q9H6H4 257 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 SOX17Q9H6I2 414 aaPredicted RBP14.85□□□□□ -0.03
USP40-206ENST00000443711 GPN2Q9H9Y4 310 aaPredicted RBP14.85□□□□□ -0.03
USP40-206ENST00000443711 MIEF1Q9NQG6 463 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 EHD3Q9NZN3 535 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 HEY2Q9UBP5 337 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 TCFL5Q9UL49 500 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 PCDHGA6Q9Y5G7 932 aa14.85□□□□□ -0.03
USP40-206ENST00000443711 CEP295Q9C0D2 2601 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 IDSB3KWA1 339 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 PRKRAO75569 313 aaKnown RBP14.84□□□□□ -0.03
USP40-206ENST00000443711 CDC123O75794 336 aaPredicted RBP14.84□□□□□ -0.03
USP40-206ENST00000443711 KLF7O75840 302 aaPredicted RBP14.84□□□□□ -0.03
USP40-206ENST00000443711 LRATO95237 230 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 IGHEP01854 428 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 ATP4BP51164 291 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 C21orf58P58505 322 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 BTG2P78543 158 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 SLC13A2Q13183 592 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 CLN3Q13286 438 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 SLC48A1Q6P1K1 146 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 QSOX2Q6ZRP7 698 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 SHISA6Q6ZSJ9 500 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 MMP21Q8N119 569 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 MIER2Q8N344 545 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 DNAJB14Q8TBM8 379 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 KCNE4Q8WWG9 221 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 UCN3Q969E3 161 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 GFM2Q969S9 779 aaKnown RBP14.84□□□□□ -0.03
USP40-206ENST00000443711 PTCHD1Q96NR3 888 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 PRPF18Q99633 342 aaKnown RBP14.84□□□□□ -0.03
USP40-206ENST00000443711 CRB3Q9BUF7 120 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 VN1R1Q9GZP7 353 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 SDR39U1Q9NRG7 319 aaPredicted RBP14.84□□□□□ -0.03
USP40-206ENST00000443711 MRGBPQ9NV56 204 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 WDR70Q9NW82 654 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 ZIM2Q9NZV7 527 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 ATP6V1HQ9UI12 483 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 C3orf18Q9UK00 162 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 CES1P1Q9UKY3 287 aa14.84□□□□□ -0.03
USP40-206ENST00000443711 EXO1Q9UQ84 846 aaKnown RBP14.84□□□□□ -0.03
USP40-206ENST00000443711 NCOR2Q9Y618 2525 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 SYNDIG1LA6NDD5 238 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 WASHC1A8K0Z3 465 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 ANKRD28O15084 1053 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 TLX3O43711 291 aaPredicted RBP14.83□□□□□ -0.04
USP40-206ENST00000443711 TBX19O60806 448 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 SLC22A3O75751 556 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 GPR75O95800 540 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 RECKO95980 971 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 FURINP09958 794 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 F8A1P23610 371 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 PIK3R1P27986 724 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 MRPL19P49406 292 aaKnown RBP14.83□□□□□ -0.04
USP40-206ENST00000443711 CLNS1AP54105 237 aaKnown RBP14.83□□□□□ -0.04
USP40-206ENST00000443711 NME5P56597 212 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 RHAGQ02094 409 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 STX4Q12846 297 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 BIKQ13323 160 aa14.83□□□□□ -0.04
USP40-206ENST00000443711 GKAP1Q5VSY0 366 aaPredicted RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms