RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SOX14O95416 240 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 CD160O95971 181 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 ADAP00813 363 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 JUPP14923 745 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 RHCEP18577 417 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 IDSP22304 550 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 PTBP1P26599 531 aaKnown RBP eCLIP10.21□□□□□ -0.78
USP54-204ENST00000422491 ETV5P41161 510 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 ETV1P50549 477 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 ATN1P54259 1190 aaPredicted RBP10.21□□□□□ -0.78
USP54-204ENST00000422491 CDH4P55283 916 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 RPS24P62847 133 aaKnown RBP10.21□□□□□ -0.78
USP54-204ENST00000422491 FCN2Q15485 313 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 CRB2Q5IJ48 1285 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 GCNT6Q5T4J0 391 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 QSOX2Q6ZRP7 698 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 KIF18BQ86Y91 864 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 VPS37AQ8NEZ2 397 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 HUS1BQ8NHY5 278 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 ZNF431Q8TF32 576 aaPredicted RBP10.21□□□□□ -0.78
USP54-204ENST00000422491 TM9SF4Q92544 642 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 SLC28A3Q9HAS3 691 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 IL26Q9NPH9 171 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 MGAT4AQ9UM21 535 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 DIMT1Q9UNQ2 313 aaKnown RBP10.21□□□□□ -0.78
USP54-204ENST00000422491 SLC22A14Q9Y267 594 aa10.21□□□□□ -0.78
USP54-204ENST00000422491 SPIN1Q9Y657 262 aaPredicted RBP10.21□□□□□ -0.78
USP54-204ENST00000422491 A0A0A6YYJ9 748 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 TRBV4-1A0A0J9YWV2 114 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 PRR23AA6NEV1 266 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 FFAR1O14842 300 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 BPIP17213 487 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 CD22P20273 847 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 HOXC8P31273 242 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 BTG1P62324 171 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 RAE1P78406 368 aaKnown RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 TUSC3Q13454 348 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 KCNC3Q14003 757 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 IL18Q14116 193 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 ZNF267Q14586 743 aaPredicted RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 AANATQ16613 207 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 OCLNQ16625 522 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 ATAT1Q5SQI0 421 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 ANXA8L1Q5VT79 327 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 GPR139Q6DWJ6 353 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 ANGPTL8Q6UXH0 198 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 COMMD7Q86VX2 200 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 GPALPP1Q8IXQ4 340 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 GALNT11Q8NCW6 608 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 OR52I1Q8NGK6 324 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 OR4A15Q8NGL6 344 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 OR8J1Q8NGP2 316 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 UCN3Q969E3 161 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 MTERF3Q96E29 417 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 TOE1Q96GM8 510 aaKnown RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 FUBP3Q96I24 572 aaKnown RBP eCLIP10.2□□□□□ -0.78
USP54-204ENST00000422491 TMEM38AQ9H6F2 299 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 FOLH1BQ9HBA9 442 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 SPATA6Q9NWH7 488 aaPredicted RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 AFF4Q9UHB7 1163 aaKnown RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 HCN2Q9UL51 889 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 GTPBP1O00178 669 aaKnown RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 SLC9A3R1O14745 358 aaPredicted RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 CBSLP0DN79 551 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 ATF4P18848 351 aaPredicted RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 ITGALP20701 1170 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 SLC6A1P30531 599 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 CBSP35520 551 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 PCBP3P57721 371 aaKnown RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 MRPS6P82932 125 aaKnown RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 ARF5P84085 180 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 TAF10Q12962 218 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 CHIT1Q13231 466 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 POU4F3Q15319 338 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 UBE2R2Q712K3 238 aaPredicted RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 HDDC2Q7Z4H3 204 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 LAPTM4BQ86VI4 370 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 OR11H4Q8NGC9 324 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 OR52N2Q8NGI0 321 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.2□□□□□ -0.78
USP54-204ENST00000422491 WDR20Q8TBZ3 569 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 C1GALT1C1Q96EU7 318 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 SENP5Q96HI0 755 aaPredicted RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 SORCS2Q96PQ0 1159 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 TM9SF2Q99805 663 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 ATF6BQ99941 703 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 CCSER2Q9H7U1 834 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 C1GALT1Q9NS00 363 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 KCTD5Q9NXV2 234 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 TESQ9UGI8 421 aaKnown RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 PHF11Q9UIL8 331 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 ING4Q9UNL4 249 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 SCN8AQ9UQD0 1980 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 A8MUA0 341 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 RNASET2O00584 256 aaKnown RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 AKAP8O43823 692 aaKnown RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 DDCP20711 480 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 ITPKAP23677 461 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 IL32P24001 234 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 BMP8BP34820 402 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms