RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 PACSIN3Q9UKS6 424 aa5.65□□□□□ -1.5
HMGB3-202ENST00000419110 FBXW2Q9UKT8 454 aa5.65□□□□□ -1.5
HMGB3-202ENST00000419110 SRPK3Q9UPE1 567 aa5.65□□□□□ -1.5
HMGB3-202ENST00000419110 CLCA2Q9UQC9 943 aa5.65□□□□□ -1.5
HMGB3-202ENST00000419110 PCDHGB2Q9Y5G2 931 aa5.65□□□□□ -1.5
HMGB3-202ENST00000419110 PCDHA9Q9Y5H5 950 aa5.65□□□□□ -1.5
HMGB3-202ENST00000419110 SLC22A7Q9Y694 548 aa5.65□□□□□ -1.5
HMGB3-202ENST00000419110 NINQ8N4C6 2090 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 LOC105369274A0A096LPK9 316 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 LOC102723532A0A0G2JNH3 316 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 A0A1W2PRB8 838 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 TMEM247A6NEH6 219 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 PRORSD1PA6NEY8 169 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 PRR33A8MZF0 331 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 TMEM150CB9EJG8 249 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 D6RAR5 112 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 H0Y3Z8 333 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 SH3BP5O60239 455 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 SRPX2O60687 465 aaPredicted RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 GALR3O60755 368 aaPredicted RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 ENTPD5O75356 428 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 RDH16O75452 317 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 OR2B3O76000 313 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 KRT36O76013 467 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 BMP10O95393 424 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 KRT75O95678 551 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 C6orf47O95873 294 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 GSNP06396 782 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 GPIP06744 558 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 C8BP07358 591 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 ZCCHC18P0CG32 403 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 GIMD1P0DJR0 217 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 CKMT1AP12532 417 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 RNH1P13489 461 aaKnown RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 HOXB9P17482 250 aaPredicted RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 ATP6V1B2P21281 511 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 HTR1EP28566 365 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 CDKN2CP42773 168 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 AVPR1BP47901 424 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 KHKP50053 298 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 NCBP2P52298 156 aaKnown RBP eCLIP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 MAPK10P53779 464 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 ITGA1P56199 1179 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 WNT3P56703 355 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 RAB38P57729 211 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 BTN3A2P78410 334 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 HSD11B2P80365 405 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 MRPS22P82650 360 aaKnown RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 MC1RQ01726 317 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 HSPB3Q12988 150 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 SLAMF1Q13291 335 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 SELPLGQ14242 412 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 TRIM25Q14258 630 aaKnown RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 GTDC1Q4AE62 458 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 SNAP47Q5SQN1 464 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 GCNT6Q5T4J0 391 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 YOD1Q5VVQ6 348 aaPredicted RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 NKAIN2Q5VXU1 208 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 MRM1Q6IN84 353 aaKnown RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 NANOGP8Q6NSW7 305 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 SLC48A1Q6P1K1 146 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 AAGABQ6PD74 315 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 BHLHB9Q6PI77 547 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 DLEU7Q6UYE1 221 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 TMEM64Q6YI46 380 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 PRR23CQ6ZRP0 262 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 ZNF621Q6ZSS3 439 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 UBE3DQ7Z6J8 389 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 BPHLQ86WA6 291 aaPredicted RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 PTRH1Q86Y79 214 aaKnown RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 MCATQ8IVS2 390 aaKnown RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 MSRB3Q8IXL7 192 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 SLC15A3Q8IY34 581 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 MICU2Q8IYU8 434 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 OR4N4Q8N0Y3 316 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 LRRC25Q8N386 305 aaPredicted RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 KCT2Q8NC54 265 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 FAM156AQ8NDB6 213 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 HIPK4Q8NE63 616 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 OR56A1Q8NGH5 318 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 WDR60Q8WVS4 1066 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 OR5P2Q8WZ92 322 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 FAM162AQ96A26 154 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 TM4SF18Q96CE8 201 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 COQ8BQ96D53 544 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 TM4SF19Q96DZ7 209 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 AURKBQ96GD4 344 aaPredicted RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 C10orf90Q96M02 699 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 NSMCE2Q96MF7 247 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 RNF145Q96MT1 663 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 PRRX2Q99811 253 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 MACROD1Q9BQ69 325 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 INPP5KQ9BT40 448 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 THUMPD3Q9BV44 507 aaKnown RBP5.64□□□□□ -1.51
HMGB3-202ENST00000419110 EDEM2Q9BV94 578 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 AICDAQ9GZX7 198 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 ARRDC1-AS1Q9H2J1 176 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 VCX3BQ9H321 246 aa5.64□□□□□ -1.51
HMGB3-202ENST00000419110 KLHL31Q9H511 634 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms