RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 A0A096LPI6 279 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 TRBV5-3A0A0A0MS03 114 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 ANKDD1BA6NHY2 528 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 TMEM150CB9EJG8 249 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 STATHP02808 62 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 SERPIND1P05546 499 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 FAM58BPP0C7Q3 252 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 GGT1P19440 569 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 S100A3P33764 101 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 POLE2P56282 527 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 OR4D2P58180 307 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 MC2RQ01718 297 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 EIF3IQ13347 325 aaKnown RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 ATP6AP1Q15904 470 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 DPY19L1Q2PZI1 675 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 RUNDC3AQ59EK9 446 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 LRIF1Q5T3J3 769 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 ADNP2Q6IQ32 1131 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 FKBP9P1Q75LS8 142 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 VN1R4Q7Z5H5 301 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 CHERPQ8IWX8 916 aaKnown RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 TTLQ8NG68 377 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 OR1L3Q8NH93 324 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 WDR36Q8NI36 951 aaKnown RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 ZNF501Q96CX3 271 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 REPS1Q96D71 796 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 TM4SF19Q96DZ7 209 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 ITCHQ96J02 903 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 OR52E6Q96RD3 313 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 CIB1Q99828 191 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 MACROD1Q9BQ69 325 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 TRIM8Q9BZR9 551 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 SPRTNQ9H040 489 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 GORASP2Q9H8Y8 452 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 FANCEQ9HB96 536 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 PRM3Q9NNZ6 103 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 FBXO8Q9NRD0 319 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 STARD5Q9NSY2 213 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 VAPAQ9P0L0 249 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-204ENST00000409441 MAPRE3Q9UPY8 281 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 CROCCQ5TZA2 2017 aa12.73□□□□□ -0.37
LIMS1-204ENST00000409441 KNTC1P50748 2209 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 COL27A1Q8IZC6 1860 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-204ENST00000409441 A0A1W2PNU3 283 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-204ENST00000409441 C7orf72A4D263 438 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 B4E171 279 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 PLD2O14939 933 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 POLR1CO15160 346 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-204ENST00000409441 OR2B3O76000 313 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 NCK1P16333 377 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 HOXB6P17509 224 aaKnown RBP12.72□□□□□ -0.37
LIMS1-204ENST00000409441 TSPAN7P41732 249 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 C21orf58P58505 322 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 MTPNP58546 118 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 CYP4F2P78329 520 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 DDX39BQ13838 428 aaKnown RBP12.72□□□□□ -0.37
LIMS1-204ENST00000409441 SELPLGQ14242 412 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 IL11RAQ14626 422 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 NRF1Q16656 503 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 TCTE1Q5JU00 501 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 C6orf52Q5T4I8 152 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 C10orf62Q5T681 223 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-204ENST00000409441 VN1R5Q7Z5H4 357 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 ASPGQ86U10 573 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 BPHLQ86WA6 291 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-204ENST00000409441 CSNK1A1LQ8N752 337 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 HUS1BQ8NHY5 278 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 WDR20Q8TBZ3 569 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 CREB3L4Q8TEY5 395 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 STARD8Q92502 1023 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 CNBD2Q96M20 576 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 ZNF583Q96ND8 569 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 ZNF285Q96NJ3 590 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 MTERF1Q99551 399 aaKnown RBP12.72□□□□□ -0.37
LIMS1-204ENST00000409441 SLC29A1Q99808 456 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 CTRCQ99895 268 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 RPF2Q9H7B2 306 aaKnown RBP12.72□□□□□ -0.37
LIMS1-204ENST00000409441 BRF2Q9HAW0 419 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 IRAK4Q9NWZ3 460 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 SLC39A1Q9NY26 324 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 UBAP1Q9NZ09 502 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 NDUFA13Q9P0J0 144 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 ADGRE2Q9UHX3 823 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 RARRES3Q9UL19 164 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 DLGAP4Q9Y2H0 992 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 TSC22D4Q9Y3Q8 395 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 HEATR5BQ9P2D3 2071 aa12.72□□□□□ -0.37
LIMS1-204ENST00000409441 PMS2P1A4D2B8 440 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 NDUFS4O43181 175 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 HYAL3O43820 417 aaPredicted RBP12.71□□□□□ -0.37
LIMS1-204ENST00000409441 CLEC3AO75596 197 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 LDLRP01130 860 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 JMJD7P0C870 316 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 SDC1P18827 310 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 ITIH1P19827 911 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 GSTM2P28161 218 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 PIK3CBP42338 1070 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 ITGA1P56199 1179 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 HKDC1Q2TB90 917 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms