RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SPACA6W5XKT8 324 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 MDC1Q14676 2089 aaKnown RBP17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 A0A1W2PRB8 838 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 C1orf226A1L170 272 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 FAM149AA5PLN7 773 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 PDPK1O15530 556 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 CTSVO60911 334 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 GLB1P16278 677 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 SLAMF1Q13291 335 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 LSAMPQ13449 338 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 PEAR1Q5VY43 1037 aaPredicted RBP17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 B3GNT6Q6ZMB0 384 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 RBM44Q6ZP01 1051 aaKnown RBP17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 PATL1Q86TB9 770 aaKnown RBP17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 MSRB3Q8IXL7 192 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 MAML2Q8IZL2 1156 aaPredicted RBP17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 SDCCAG3Q96C92 435 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 ZBED6CLQ96FA7 236 aaPredicted RBP17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 TEFMQ96QE5 360 aaKnown RBP17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 SERINC2Q96SA4 455 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 SEPHS2Q99611 448 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 GRIP2Q9C0E4 1043 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 KAT8Q9H7Z6 458 aaKnown RBP17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 CAAP1Q9H8G2 361 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 NEUROD4Q9HD90 331 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 GIMAP4Q9NUV9 329 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 ZSCAN32Q9NX65 697 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 TAS2R7Q9NYW3 318 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 LRIT1Q9P2V4 623 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 EXO1Q9UQ84 846 aaKnown RBP17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 TECTAO75443 2155 aa17.26■□□□□ 0.35
CCDC88C-203ENST00000389856 TLCD2A6NGC4 264 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 CLIC1O00299 241 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 EI24O14681 340 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 DUX1O43812 170 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 B3GALT2O43825 422 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 TMPRSS11DO60235 418 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 SRPX2O60687 465 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 KLHL18O94889 574 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 GSNP06396 782 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 HOXB3P14651 431 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 ATP6V1B1P15313 513 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 HOXB9P17482 250 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 CALRP27797 417 aaKnown RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 EPHA8P29322 1005 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 PTPN6P29350 595 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 ALDH3A2P51648 485 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 GPLD1P80108 840 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 ZCCHC8Q6NZY4 707 aaKnown RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 TTC33Q6PID6 262 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 USP51Q70EK9 711 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 SERPINA11Q86U17 422 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 EID3Q8N140 333 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 METTL25Q8N6Q8 603 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 TMEM105Q8N8V8 129 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 FAM110BQ8TC76 370 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 PNPT1Q8TCS8 783 aaKnown RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 OR5P2Q8WZ92 322 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 REXO5Q96IC2 774 aaKnown RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 VPS50Q96JG6 964 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 CHRNA10Q9GZZ6 450 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 PRDM9Q9NQV7 894 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 MS4A12Q9NXJ0 267 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 TAS2R9Q9NYW1 312 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 PSME2Q9UL46 239 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 BTBD3Q9Y2F9 522 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 AK5Q9Y6K8 562 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 A0A1B0GTQ1 180 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 H0YGG7 62 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 PDLIM1O00151 329 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 CXCR6O00574 342 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 KRT75O95678 551 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 NTSP30990 170 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 TTKP33981 857 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 BUD31P41223 144 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 RAB8AP61006 207 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 ARF3P61204 181 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 BTN3A2P78410 334 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 MC1RQ01726 317 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 SRSF5Q13243 272 aaKnown RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 DAG1Q14118 895 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 NDUFAF5Q5TEU4 345 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 MRM1Q6IN84 353 aaKnown RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 ZNF438Q7Z4V0 828 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 SAMD14Q8IZD0 417 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 CLECL1Q8IZS7 167 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 CSNK1A1LQ8N752 337 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 OR8K5Q8NH50 307 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 OR10A6Q8NH74 314 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 UTP15Q8TED0 518 aaKnown RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 OSBPL10Q9BXB5 764 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 SLC24A3Q9HC58 644 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 ACSS1Q9NUB1 689 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 EVA1BQ9NVM1 165 aa17.25■□□□□ 0.35
CCDC88C-203ENST00000389856 HRO43593 1189 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 ZNF888P0CJ79 500 aaPredicted RBP17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 PVRP15151 417 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 ENGP17813 658 aa17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 TLX1P31314 330 aaPredicted RBP17.24■□□□□ 0.35
CCDC88C-203ENST00000389856 CDKN2CP42773 168 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms