RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 GFM1Q96RP9 751 aaKnown RBP25.34■■□□□ 1.65
MSX1-201ENST00000382723 LYRM4Q9HD34 91 aa25.34■■□□□ 1.65
MSX1-201ENST00000382723 CES1P1Q9UKY3 287 aa25.34■■□□□ 1.65
MSX1-201ENST00000382723 CLCA2Q9UQC9 943 aa25.34■■□□□ 1.65
MSX1-201ENST00000382723 CLIC1O00299 241 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 PCBP4P57723 403 aaKnown RBP25.33■■□□□ 1.65
MSX1-201ENST00000382723 ZNF551Q7Z340 670 aaPredicted RBP25.33■■□□□ 1.65
MSX1-201ENST00000382723 CA13Q8N1Q1 262 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 NATD1Q8N6N6 113 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 TTC29Q8NA56 475 aaPredicted RBP25.33■■□□□ 1.65
MSX1-201ENST00000382723 OR10A6Q8NH74 314 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 OR1L3Q8NH93 324 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 PNPT1Q8TCS8 783 aaKnown RBP25.33■■□□□ 1.65
MSX1-201ENST00000382723 TAS2R9Q9NYW1 312 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 EGFL7Q9UHF1 273 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 FOXS1O43638 330 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 DNAJA2O60884 412 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 C8orf89P0DMQ9 161 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 TLX1P31314 330 aaPredicted RBP25.33■■□□□ 1.65
MSX1-201ENST00000382723 HSPB3Q12988 150 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 SLC14A1Q13336 389 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 CCNIQ14094 377 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 GRM7Q14831 915 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 ZNF750Q32MQ0 723 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 METTL27Q8N6F8 245 aaPredicted RBP25.33■■□□□ 1.65
MSX1-201ENST00000382723 CCDC74BQ96LY2 380 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 BBS4Q96RK4 519 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 LRFN3Q9BTN0 628 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 MS4A12Q9NXJ0 267 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 FTSJ1Q9UET6 329 aa25.33■■□□□ 1.65
MSX1-201ENST00000382723 UNC13CQ8NB66 2214 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 FITM1A5D6W6 292 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 ACOT8O14734 319 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 SOAT1P35610 550 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 SIM1P81133 766 aaPredicted RBP25.32■■□□□ 1.64
MSX1-201ENST00000382723 SHC2P98077 582 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 GARNL3Q5VVW2 1013 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 ARHGAP22Q7Z5H3 698 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 GOT1L1Q8NHS2 421 aaPredicted RBP25.32■■□□□ 1.64
MSX1-201ENST00000382723 OR5P2Q8WZ92 322 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 ZBED6CLQ96FA7 236 aaPredicted RBP25.32■■□□□ 1.64
MSX1-201ENST00000382723 EDEM2Q9BV94 578 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 RPF2Q9H7B2 306 aaKnown RBP25.32■■□□□ 1.64
MSX1-201ENST00000382723 PDP2Q9P2J9 529 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 ZNF282Q9UDV7 671 aaPredicted RBP25.32■■□□□ 1.64
MSX1-201ENST00000382723 SNX8Q9Y5X2 465 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 SPACA6W5XKT8 324 aa25.32■■□□□ 1.64
MSX1-201ENST00000382723 EVPLLA8MZ36 301 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 ZCCHC18P0CG32 403 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 ATXN8OSP0DMR3 200 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 NTSP30990 170 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 FRKP42685 505 aaPredicted RBP25.31■■□□□ 1.64
MSX1-201ENST00000382723 SPATS1Q496A3 300 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 C10orf111Q8N326 155 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 BHLHE22Q8NFJ8 381 aaPredicted RBP25.31■■□□□ 1.64
MSX1-201ENST00000382723 OR5AK3PQ8NH89 298 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 PHF12Q96QT6 1004 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 DPYSL5Q9BPU6 564 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 KAT8Q9H7Z6 458 aaKnown RBP25.31■■□□□ 1.64
MSX1-201ENST00000382723 TPT1P8Q9HAU6 139 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 FGF21Q9NSA1 209 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 HCN3Q9P1Z3 774 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 ENTPD4Q9Y227 616 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 A0A1W2PS29 197 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 H3BMH7 237 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 BCAS2O75934 225 aaPredicted RBP25.31■■□□□ 1.64
MSX1-201ENST00000382723 ATP6V1G2O95670 118 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 NTRK1P04629 796 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 FEN1P39748 380 aaKnown RBP25.31■■□□□ 1.64
MSX1-201ENST00000382723 NCBP2P52298 156 aaKnown RBP eCLIP25.31■■□□□ 1.64
MSX1-201ENST00000382723 FAM53BQ14153 422 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 SPIDRQ14159 915 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 PRAMEF17Q5VTA0 474 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 TRIML2Q8N7C3 387 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 STMN2Q93045 179 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 CNRIP1Q96F85 164 aaPredicted RBP25.31■■□□□ 1.64
MSX1-201ENST00000382723 ZNF583Q96ND8 569 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 SLC35A5Q9BS91 424 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 NPLQ9BXD5 320 aaPredicted RBP25.31■■□□□ 1.64
MSX1-201ENST00000382723 CXorf36Q9H7Y0 433 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 ACSL6Q9UKU0 697 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 PSME2Q9UL46 239 aa25.31■■□□□ 1.64
MSX1-201ENST00000382723 FAM227AF5H4B4 570 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 CHST10O43529 356 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 ANKRD34CP0C6C1 535 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 CD59P13987 128 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 OR4D2P58180 307 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 PHF19Q5T6S3 580 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 CYP2R1Q6VVX0 501 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 GPR135Q8IZ08 494 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 MMABQ96EY8 250 aaPredicted RBP25.3■■□□□ 1.64
MSX1-201ENST00000382723 GLIPR2Q9H4G4 154 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 FANCEQ9HB96 536 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 CUTCQ9NTM9 273 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 SEMA4GQ9NTN9 838 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 SERTAD3Q9UJW9 196 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 ZNF780BQ9Y6R6 833 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 CROCCQ5TZA2 2017 aa25.3■■□□□ 1.64
MSX1-201ENST00000382723 PTGER1P34995 402 aa25.29■■□□□ 1.64
MSX1-201ENST00000382723 ITGA1P56199 1179 aa25.29■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms