RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 KIAA0408Q6ZU52 694 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 GPRIN1Q7Z2K8 1008 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 FBXL16Q8N461 479 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 DUSP9Q99956 384 aaKnown RBP8.8□□□□□ -1
LIMCH1-202ENST00000381753 COPS4Q9BT78 406 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 SIGLEC1Q9BZZ2 1709 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 M0R1B8 84 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 MANBAO00462 879 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 CDX4O14627 284 aaPredicted RBP8.8□□□□□ -1
LIMCH1-202ENST00000381753 ADAMTS3O15072 1205 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 MMP2P08253 660 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 TIMP2P16035 220 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 MATN1P21941 496 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 ACRV1P26436 265 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 ADSSP30520 456 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 PCGF2P35227 344 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 PKNOX1P55347 436 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 ZP2Q05996 745 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 SLC36A3Q495N2 470 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 FAM180BQ6P0A1 224 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 LRRTM3Q86VH5 581 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 DHFR2Q86XF0 187 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 RND1Q92730 232 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 SIKE1Q9BRV8 207 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 SLC6A20Q9NP91 592 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 UCKL1Q9NWZ5 548 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 C1orf109Q9NX04 203 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 ATXN10Q9UBB4 475 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 NUP50Q9UKX7 468 aa8.8□□□□□ -1
LIMCH1-202ENST00000381753 HTR3EA5X5Y0 456 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 ALOX12BO75342 701 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 LY86O95711 162 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 PTPN6P29350 595 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 RNF144AP50876 292 aaPredicted RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 SGSHP51688 502 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 CA9Q16790 459 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 LIPIQ6XZB0 460 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 KRT74Q7RTS7 529 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 CCDC103Q8IW40 242 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 TMEM171Q8WVE6 324 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 ASB5Q8WWX0 329 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 DTD2Q96FN9 168 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 HDAC8Q9BY41 377 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 HOXD1Q9GZZ0 328 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 RNF38Q9H0F5 515 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 ISCUQ9H1K1 167 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 CLEC4MQ9H2X3 399 aaPredicted RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 ANKZF1Q9H8Y5 726 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 KCNS2Q9ULS6 477 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 WDR45Q9Y484 360 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 AFDNP55196 1824 aaKnown RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 A0A1B0GX78 115 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 ANKRD30BLA7E2S9 258 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 TBX10O75333 385 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 GBAP04062 536 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 NUBP1P53384 320 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 MPP2Q14168 576 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 SNAPC1Q16533 368 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 PERM1Q5SV97 790 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 C1orf53Q5VUE5 145 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 RPS19BP1Q86WX3 136 aaKnown RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 GPR65Q8IYL9 337 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 POC5Q8NA72 575 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 ZNF548Q8NEK5 533 aaPredicted RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 OR51Q1Q8NH59 317 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 ZNF578Q96N58 590 aaPredicted RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 HBEGFQ99075 208 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 UCK2Q9BZX2 261 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 FOLH1BQ9HBA9 442 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 IL20RAQ9UHF4 553 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 PCDHGA10Q9Y5H3 936 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 HTRA2O43464 458 aaPredicted RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 TMEM63AO94886 807 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 ADORA3P0DMS8 318 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 SNU13P55769 128 aaKnown RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 SNRPD2P62316 118 aaKnown RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 TEKQ02763 1124 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 TRA2AQ13595 282 aaKnown RBP eCLIP8.79□□□□□ -1
LIMCH1-202ENST00000381753 LIPMQ5VYY2 423 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 TMPRSS12Q86WS5 348 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 PDSS2Q86YH6 399 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 TDRPQ86YL5 185 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 AADATQ8N5Z0 425 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 OR2L3Q8NG85 312 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 OR14A16Q8NHC5 309 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 SLC2A12Q8TD20 617 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 THAP1Q9NVV9 213 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 KCNIP1Q9NZI2 227 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 KCMF1Q9P0J7 381 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 KNDC1Q76NI1 1749 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 DRGXA6NNA5 263 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 TRIM24O15164 1050 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 ZNF888P0CJ79 500 aaPredicted RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 XRCC1P18887 633 aaPredicted RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 SQLEQ14534 574 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 SIX1Q15475 284 aaPredicted RBP8.79□□□□□ -1
LIMCH1-202ENST00000381753 C6orf141Q5SZD1 244 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.79□□□□□ -1
LIMCH1-202ENST00000381753 PRAMEF8Q5VWM4 474 aa8.79□□□□□ -1
LIMCH1-202ENST00000381753 PRAMEF7Q5VXH5 474 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms