RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ZBTB8BQ8NAP8 495 aaPredicted RBP12.72□□□□□ -0.37
CCDC3-202ENST00000378839 RHOXF1Q8NHV9 184 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 GGHQ92820 318 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 GTPBP3Q969Y2 492 aaKnown RBP12.72□□□□□ -0.37
CCDC3-202ENST00000378839 SH3YL1Q96HL8 342 aaPredicted RBP12.72□□□□□ -0.37
CCDC3-202ENST00000378839 STON1Q9Y6Q2 735 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 ATG2BQ96BY7 2078 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 A0A1W2PP55 124 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 TRBC2A0A5B9 178 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 ADAMDEC1O15204 470 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 DNAJB5O75953 348 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 IGFBP1P08833 259 aaPredicted RBP12.72□□□□□ -0.37
CCDC3-202ENST00000378839 ACP5P13686 325 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 PBX2P40425 430 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 DSTNP60981 165 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 SNRPNP63162 240 aaKnown RBP12.72□□□□□ -0.37
CCDC3-202ENST00000378839 REEP5Q00765 189 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 OCA2Q04671 838 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 RUNX3Q13761 415 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 ZNF770Q6IQ21 691 aaPredicted RBP12.72□□□□□ -0.37
CCDC3-202ENST00000378839 ZNF793Q6ZN11 406 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 KRT78Q8N1N4 520 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 PDXPQ96GD0 296 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 FKBP14Q9NWM8 211 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 SCN3BQ9NY72 215 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 GPR83Q9NYM4 423 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 PRKAG2Q9UGJ0 569 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 PSORS1C1Q9UIG5 152 aa12.72□□□□□ -0.37
CCDC3-202ENST00000378839 NUMA1Q14980 2115 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 A0A1W2PS29 197 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 ANKDD1BA6NHY2 528 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 C1QTNF3-AMACRE9PGA6 284 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 BCHEP06276 602 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 GRK5P34947 590 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 CSNK1G2P78368 415 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 DUSP6Q16828 381 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 ZNF630Q2M218 657 aaPredicted RBP12.71□□□□□ -0.37
CCDC3-202ENST00000378839 KIAA1211LQ6NV74 962 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 NCCRP1Q6ZVX7 275 aaPredicted RBP12.71□□□□□ -0.37
CCDC3-202ENST00000378839 LACC1Q8IV20 430 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 SLC44A2Q8IWA5 706 aaPredicted RBP12.71□□□□□ -0.37
CCDC3-202ENST00000378839 DNAJC22Q8N4W6 341 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 KIAA1958Q8N8K9 716 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 CREB3L4Q8TEY5 395 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 EXOSC8Q96B26 276 aaKnown RBP12.71□□□□□ -0.37
CCDC3-202ENST00000378839 OTUB1Q96FW1 271 aaPredicted RBP12.71□□□□□ -0.37
CCDC3-202ENST00000378839 PIP5K1AQ99755 562 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 TAS2R16Q9NYV7 291 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 KCNK6Q9Y257 313 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 YBX2Q9Y2T7 364 aaKnown RBP12.71□□□□□ -0.37
CCDC3-202ENST00000378839 RWDD3Q9Y3V2 267 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 HEATR5BQ9P2D3 2071 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 TRBV4-1A0A0J9YWV2 114 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 EPOPA6NHQ4 379 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 HMGN4O00479 90 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 OR1F1O43749 312 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 HMGA2P52926 109 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 PDGFRLQ15198 375 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 SEC23BQ15437 767 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 CST6Q15828 149 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 SYT16Q17RD7 645 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 HMGN2P46Q86SG4 172 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 UBE2E3Q969T4 207 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 NEURL3Q96EH8 262 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 ABHD8Q96I13 439 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 KXD1Q9BQD3 176 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 PELI2Q9HAT8 420 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 AP1M2Q9Y6Q5 423 aa12.71□□□□□ -0.37
CCDC3-202ENST00000378839 PRR23AA6NEV1 266 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 OR52A4PA6NMU1 304 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 CBLP22681 906 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 FRKP42685 505 aaPredicted RBP12.71□□□□□ -0.38
CCDC3-202ENST00000378839 IDH2P48735 452 aaKnown RBP12.71□□□□□ -0.38
CCDC3-202ENST00000378839 IFITM3Q01628 133 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 ZNF750Q32MQ0 723 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 LEXMQ3ZCV2 418 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 KLHL17Q6TDP4 642 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 OR2A1Q8NGT9 310 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 DYNC2LI1Q8TCX1 351 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 TMEM19Q96HH6 336 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 ZNF347Q96SE7 839 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 TRPV4Q9HBA0 871 aa12.71□□□□□ -0.38
CCDC3-202ENST00000378839 LINC01565O15544 149 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 TRIM23P36406 574 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 CCR8P51685 355 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 MANFP55145 182 aaKnown RBP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 DUSP2Q05923 314 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 HYAL2Q12891 473 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 SOWAHCQ53LP3 525 aaPredicted RBP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 UBE2UQ5VVX9 321 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 DCDC5Q6ZRR9 648 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 SLCO6A1Q86UG4 719 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 P2RY8Q86VZ1 359 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 HDDC3Q8N4P3 179 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 TRUB1Q8WWH5 349 aaKnown RBP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 GEMIN6Q8WXD5 167 aaKnown RBP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 RAB7BQ96AH8 199 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 COPS4Q9BT78 406 aa12.7□□□□□ -0.38
CCDC3-202ENST00000378839 RSPH9Q9H1X1 276 aaPredicted RBP12.7□□□□□ -0.38
CCDC3-202ENST00000378839 AKIP1Q9NQ31 210 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms