RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 TRIM71Q2Q1W2 868 aaKnown RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 DEFB110Q30KQ9 67 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 FAM78AQ5JUQ0 283 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 PRPF38BQ5VTL8 546 aaKnown RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 ANKLE1Q8NAG6 615 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 GOLM1Q8NBJ4 401 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 OR52E4Q8NGH9 312 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 OR5M3Q8NGP4 307 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 PDLIM5Q96HC4 596 aaKnown RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 TEX37Q96LM6 180 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 TUBB1Q9H4B7 451 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 Q9N2J8 555 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 EBF1Q9UH73 591 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 MICAL3Q7RTP6 2002 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 FABP12A6NFH5 140 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 GABRR3A8MPY1 467 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 RFXAPO00287 272 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 OR7A17O14581 309 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 KHNYNO15037 678 aaKnown RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 CCNKO75909 580 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 GSTM3P21266 225 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 MAGEA12P43365 314 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 HK3P52790 923 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 RGNQ15493 299 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 TMEM31Q5JXX7 168 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 CES4AQ5XG92 561 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 USP43Q70EL4 1123 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 SLC5A8Q8N695 610 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 ZNF740Q8NDX6 193 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 OR51A7Q8NH64 312 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 C9orf43Q8TAL5 461 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 GFM1Q96RP9 751 aaKnown RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 BARD1Q99728 777 aaKnown RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 PIP5K1AQ99755 562 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 FAM83CQ9BQN1 747 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 ZBP1Q9H171 429 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 ZNF696Q9H7X3 374 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 TMEM138Q9NPI0 162 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 TNFRSF10DQ9UBN6 386 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 CFL2Q9Y281 166 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 H3BSH0 61 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 SSNA1O43805 119 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 STSP08842 583 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 TFPTP0C1Z6 253 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 CBLP22681 906 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 SDC2P34741 201 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 HLCSP50747 726 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 RPS26P11Q5JNZ5 115 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 ZNF554Q86TJ5 538 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 PHOSPHO1Q8TCT1 267 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 TAMM41Q96BW9 452 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 CD180Q99467 661 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 BHLHE41Q9C0J9 482 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 TUBA8Q9NY65 449 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 RNF6Q9Y252 685 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 CLPXO76031 633 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 AGR2O95994 175 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 OMPP47874 163 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 FAM214AQ32MH5 1076 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 FIGNL1Q6PIW4 674 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 FAM43BQ6ZT52 329 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 NRROSQ86YC3 692 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 JSRP1Q96MG2 331 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 MCCC1Q96RQ3 725 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 MVB12BQ9H7P6 319 aa12.61□□□□□ -0.39
NPHP4-203ENST00000378169 GPN3Q9UHW5 284 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-203ENST00000378169 SHROOM3Q8TF72 1996 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 TCRBV3S1A0A5B6 114 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 IDH3BO43837 385 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 STT3AP46977 705 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 CSNK1DP48730 415 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 PSMD4P55036 377 aaKnown RBP12.6□□□□□ -0.39
NPHP4-203ENST00000378169 RHAGQ02094 409 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 IDNKQ5T6J7 187 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 UNC5DQ6UXZ4 953 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 USP53Q70EK8 1073 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 SIX5Q8N196 739 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 OR52N2Q8NGI0 321 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 SMPDL3BQ92485 455 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 TMED9Q9BVK6 235 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 IL20RAQ9UHF4 553 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 ZNF222Q9UK12 451 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 SAGE2PA6NJ88 616 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 PFKLP17858 780 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 BMP8BP34820 402 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 GABRA3P34903 492 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 SCN1BQ07699 218 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 SLC14A2Q15849 920 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 RUNDC3AQ59EK9 446 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 OR4C11Q6IEV9 310 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 BMP8AQ7Z5Y6 402 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 OR9Q2Q8NGE9 314 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 TNFRSF12AQ9NP84 129 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 SLC35C2Q9NQQ7 365 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 MED31Q9Y3C7 131 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 GVINP1Q7Z2Y8 2422 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 SLC1A7O00341 560 aa12.6□□□□□ -0.39
NPHP4-203ENST00000378169 CPNE3O75131 537 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms