RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 Q6ZR54 194 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 Q71RC1 249 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 CHMP1BQ7LBR1 199 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF444Q8N0Y2 327 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 SLC43A2Q8N370 569 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 FBXW8Q8N3Y1 598 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 TRPV3Q8NET8 790 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 DTD2Q96FN9 168 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 SLC45A3Q96JT2 553 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 PCDHB18PQ96TA0 734 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 RPP25Q9BUL9 199 aaKnown RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ZDHHC6Q9H6R6 413 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 GPN1Q9HCN4 374 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 EXOC7Q9UPT5 735 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 SH3GLB1Q9Y371 365 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 STRAPQ9Y3F4 350 aaKnown RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 hCG_38984A0A1B0GV85 526 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 SRRM4A7MD48 611 aaKnown RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 NPIPB9F8W1W9 429 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 G3V2L1 256 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 SURF4O15260 269 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 SIGLEC5O15389 551 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 HTATSF1O43719 755 aaKnown RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ATP6V1G1O75348 118 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 CPNE6O95741 557 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 EPOP01588 193 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 MELTFP08582 738 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 BCL3P20749 454 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ACKR3P25106 362 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 PDHA2P29803 388 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 HLA-FP30511 346 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 OR1D2P34982 312 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 PTGER3P43115 390 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 TSFMP43897 325 aaKnown RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 TNFSF10P50591 281 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 SLC12A3P55017 1021 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 CASP9P55211 416 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 GPR50Q13585 617 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 KRT31Q15323 416 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 SPHARQ15513 63 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 FRRS1Q6ZNA5 592 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 STHQ8IWL8 128 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 DND1Q8IYX4 353 aaKnown RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 SLC22A15Q8IZD6 547 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 OR5T2Q8NGG2 359 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 OR4D10Q8NGI6 311 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 OR4A16Q8NH70 328 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 RPLP0P6Q8NHW5 317 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 URGCPQ8TCY9 931 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 GPR148Q8TDV2 347 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 UBTD2Q8WUN7 234 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 GUCD1Q96NT3 240 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 PAPOLGQ9BWT3 736 aaKnown RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 TSPYL1Q9H0U9 437 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 MED20Q9H944 212 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 B3GAT2Q9NPZ5 323 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 PRMT8Q9NR22 394 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ANO10Q9NW15 660 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 MIS18AQ9NYP9 233 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 PLEK2Q9NYT0 353 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 NDUFA13Q9P0J0 144 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 HMG20BQ9P0W2 317 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 IL19Q9UHD0 177 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 TRMT6Q9UJA5 497 aaKnown RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 OR1A2Q9Y585 309 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 STYXL1Q9Y6J8 313 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF646O15015 1829 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 GON4LQ3T8J9 2241 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 SHISA7A6NL88 538 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ANHXE9PGG2 379 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 LMO7DNF2Z398 122 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 PHOX2AO14813 284 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 P2RX6O15547 441 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 PHF1O43189 567 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 HSF2BPO75031 334 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 REC8O95072 547 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 RPLP0P05388 317 aaKnown RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 DUX4L4P0CJ87 422 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 C4BPBP20851 252 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 IL4RP24394 825 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 GIFP27352 417 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 EVCP57679 992 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 KCNK10P57789 538 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 TRA2BP62995 288 aaKnown RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 PDK1Q15118 436 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 C3AR1Q16581 482 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 STX1AQ16623 288 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 CCDC92Q53HC0 331 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 PLPP4Q5VZY2 271 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 SEL1L3Q68CR1 1132 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 SNRNP48Q6IEG0 339 aaKnown RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 B3GLCTQ6Y288 498 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 Q6ZVQ6 151 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 TIPARPQ7Z3E1 657 aaKnown RBP1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ZSCAN30Q86W11 494 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 KRTAP11-1Q8IUC1 163 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF619Q8N2I2 560 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 ELMOD1Q8N336 334 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 METTL4Q8N3J2 472 aa1.74□□□□□ -2.13
VPS13A-206ENST00000376646 SIDT2Q8NBJ9 832 aaKnown RBP1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms