RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 CFAP161Q6P656 301 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 TTC23LQ6PF05 361 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SLC30A9Q6PML9 568 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SLC2A7Q6PXP3 512 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SERPINA13PQ6UXR4 307 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 LINGO4Q6UY18 593 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 MACC1Q6ZN28 852 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 DPY19L3Q6ZPD9 716 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 C1orf122Q6ZSJ8 110 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 TPGS1Q6ZTW0 290 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 FRA10AC1Q70Z53 315 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 TAS2R42Q7RTR8 314 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 GOLGA7Q7Z5G4 137 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SERPINA9Q86WD7 417 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CARM1Q86X55 608 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 ZFAND4Q86XD8 727 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 GALNT15Q8N3T1 639 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 ZBTB2Q8N680 514 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 ZNF366Q8N895 744 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SNX31Q8N9S9 440 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 PAPD5Q8NDF8 572 aaKnown RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 OR2T11Q8NH01 316 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 WFDC5Q8TCV5 224 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 DDI1Q8WTU0 396 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 EEF1AKMT1Q8WVE0 214 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 ISG20Q96AZ6 181 aaKnown RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 TRIM43Q96BQ3 446 aaPredicted RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 NMD3Q96D46 503 aaKnown RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 EID2BQ96D98 161 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 MSLNLQ96KJ4 702 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 ZNF48Q96MX3 618 aaPredicted RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 SLC22A12Q96S37 553 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SERINC2Q96SA4 455 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SLC39A3Q9BRY0 314 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 HTATIP2Q9BUP3 242 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SPATA16Q9BXB7 569 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CLPBQ9H078 707 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 ATP13A3Q9H7F0 1226 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 COQ10BQ9H8M1 238 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 RDH14Q9HBH5 336 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 ZNF334Q9HCZ1 680 aaPredicted RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 BPIFA1Q9NP55 256 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 TRIM36Q9NQ86 728 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 ASIC5Q9NY37 505 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 TUBA8Q9NY65 449 aaPredicted RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 UBAP1Q9NZ09 502 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CD274Q9NZQ7 290 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 GIMAP2Q9UG22 337 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SUN2Q9UH99 717 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 TBX21Q9UL17 535 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 OARD1Q9Y530 152 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SNX13Q9Y5W8 968 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 PTGDR2Q9Y5Y4 395 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CPQQ9Y646 472 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 COMMD3-BMI1R4GMX3 469 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 KIAA1549LQ6ZVL6 1849 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 TRAV19A0A0A6YYK7 116 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 GLYATL1P3A0A0U1RQE8 302 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 C1orf232A0A0U1RR37 186 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 LOC102723971A0A1B0GUV8 181 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 A0A1W2PQ67 120 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 NCF1BA6NI72 391 aaPredicted RBP4.6□□□□□ -1.67
USP48-202ENST00000374730 NCF1CA8MVU1 366 aaPredicted RBP4.6□□□□□ -1.67
USP48-202ENST00000374730 OR7A17O14581 309 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 ANKRD28O15084 1053 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 LSM1O15116 133 aaKnown RBP4.6□□□□□ -1.67
USP48-202ENST00000374730 ARPC2O15144 300 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 TAPBPO15533 448 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 FFAR2O15552 330 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 SYNCRIPO60506 623 aaKnown RBP4.6□□□□□ -1.67
USP48-202ENST00000374730 ZNF821O75541 412 aaPredicted RBP4.6□□□□□ -1.67
USP48-202ENST00000374730 CLPTM1O96005 669 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 TFAP2AP05549 437 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 CAPN1P07384 714 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 ALPIP09923 528 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 CBSLP0DN79 551 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 NCF1P14598 390 aaPredicted RBP4.6□□□□□ -1.67
USP48-202ENST00000374730 CTPS1P17812 591 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 PSMC3P17980 439 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 IL10P22301 178 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 GABRR2P28476 465 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 HTR1EP28566 365 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 SERPINA4P29622 427 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 CBSP35520 551 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 HNF1BP35680 557 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 PEX19P40855 299 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 NSG1P42857 185 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 STT3AP46977 705 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 HTR6P50406 440 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 POLR2JP52435 117 aaKnown RBP4.6□□□□□ -1.67
USP48-202ENST00000374730 ATXN3P54252 364 aaPredicted RBP4.6□□□□□ -1.67
USP48-202ENST00000374730 NME5P56597 212 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 ERVPABLB-1P60509 514 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 UFM1P61960 85 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 SNRPD1P62314 119 aaKnown RBP4.6□□□□□ -1.67
USP48-202ENST00000374730 ZXDBP98169 803 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 ECT2LQ008S8 904 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 LIPEQ05469 1076 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 LMAN2Q12907 356 aa4.6□□□□□ -1.67
USP48-202ENST00000374730 MAD2L1Q13257 205 aaPredicted RBP4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms