RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 SMPDL3AQ92484 453 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 MINDY3Q9H8M7 445 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 TIGARQ9NQ88 270 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 PRODH2Q9UF12 536 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 C19orf25Q9UFG5 118 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-202ENST00000347401 ZDHHC2Q9UIJ5 367 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 SPATA31A5Q5VU36 1347 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 SPATA31A7Q8IWB4 1347 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 PCDH17O14917 1159 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 NPC1O15118 1278 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 SLC34A2O95436 690 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 ZNF792Q3KQV3 632 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 CHST9Q7L1S5 443 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 OR7D4Q8NG98 312 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 HMCESQ96FZ2 354 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 CD244Q9BZW8 370 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 PRKAB1Q9Y478 270 aa12.82□□□□□ -0.36
COL6A3-202ENST00000347401 FNTBP49356 437 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 GALEQ14376 348 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 MELKQ14680 651 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 GPR88Q9GZN0 384 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 CRTAC1Q9NQ79 661 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 ZDHHC7Q9NXF8 308 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 DDTLA6NHG4 134 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 PDHXO00330 501 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 ASPAP45381 313 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 INAVAQ3KP66 663 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 FAM122CQ6P4D5 195 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 LRRC28Q86X40 367 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 BMFQ96LC9 184 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 ZNF821O75541 412 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 KCNAB2Q13303 367 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 RCAN2Q14206 197 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 MPP7Q5T2T1 576 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 C22orf15Q8WYQ4 148 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 PMM1Q92871 262 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 BARD1Q99728 777 aaKnown RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 TMEM100Q9NV29 134 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 EME2A4GXA9 379 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 E2F3O00716 465 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 BUD23O43709 281 aaKnown RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 FARS2O95363 451 aaKnown RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 ALPPL2P10696 532 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 CHRM1P11229 460 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 PTPRAP18433 802 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 AMY2BP19961 511 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 CHATP28329 748 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 TAF10Q12962 218 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 PAFAH1B3Q15102 231 aaKnown RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 KRBOX4Q5JUW0 171 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 APOBEC3HQ6NTF7 200 aaKnown RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 JOSD2Q8TAC2 188 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 ASB13Q8WXK3 278 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 ENPP5Q9UJA9 477 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 ZNFX1Q9P2E3 1918 aaKnown RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 SPATA31D3P0C874 917 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 CDH15P55291 814 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 LILRA4P59901 499 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 NDUFAF5Q5TEU4 345 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 SPATA31D4Q6ZUB0 917 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 SIDT2Q8NBJ9 832 aaKnown RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 MUS81Q96NY9 551 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 ATG5Q9H1Y0 275 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 PCDHA2Q9Y5H9 948 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 IRS2Q9Y4H2 1338 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 AGAP14A8MT82 685 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 TPST2O60704 377 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 BCHEP06276 602 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 EPHX2P34913 555 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 IDH3GP51553 393 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 STC1P52823 247 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 C2orf76Q3KRA6 126 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 CMTM1Q8IZ96 169 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 ZNF225Q9UK10 706 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 TIMM8BQ9Y5J9 83 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-202ENST00000347401 APC2O95996 2303 aa12.81□□□□□ -0.36
COL6A3-202ENST00000347401 TBC1D3DA0A087WVF3 549 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 TBC1D3IA0A087WXS9 549 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 TBC1D3EA0A087X179 549 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 TBC1D3KA0A087X1G2 549 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 TCRBV7S2A1N4TA0A589 114 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 TBC1D3FA6NER0 549 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-202ENST00000347401 TBC1D3LB9A6J9 549 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 TBC1D3HP0C7X1 549 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 GP1BBP13224 206 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 CELP19835 753 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 MEP1AQ16819 746 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 TBC1D3GQ6DHY5 549 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 TBC1D3CQ6IPX1 549 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 TBC1D3Q8IZP1 549 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-202ENST00000347401 OR7G1Q8NGA0 311 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 HMX1Q9NP08 348 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-202ENST00000347401 BCL9O00512 1426 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 E7EQ34 232 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 NEDD8-MDP1E9PL57 170 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 GLUD1P00367 558 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 DLX5P56178 289 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 DSC2Q02487 901 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 FUT2Q10981 343 aa12.8□□□□□ -0.36
COL6A3-202ENST00000347401 VARS2Q5ST30 1063 aaKnown RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms