RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 NUP54Q7Z3B4 507 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 SLITRK2Q9H156 845 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 CD248Q9HCU0 757 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 WSB2Q9NYS7 404 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 TRPM6Q9BX84 2022 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 XKRYO14609 159 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 PDYNP01213 254 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 LAMP1P11279 417 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 ITIH1P19827 911 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 DDCP20711 480 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 PDHA2P29803 388 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 CLDN2P57739 230 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 COX10Q12887 443 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 CRB2Q5IJ48 1285 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 NDUFAF5Q5TEU4 345 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 KMT5CQ86Y97 462 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 MCEMP1Q8IX19 187 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 KBTBD2Q8IY47 623 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 PROKR1Q8TCW9 393 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 MYLIPQ8WY64 445 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 TSACCQ96A04 125 aaPredicted RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 TMEM74Q96NL1 305 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 SH3GL3Q99963 347 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 RACGAP1Q9H0H5 632 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 SEMA6AQ9H2E6 1030 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 FZD3Q9NPG1 666 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 TAAR2Q9P1P5 351 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 GPR45Q9Y5Y3 372 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 CCDC168Q8NDH2 2452 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 RTCAO00442 366 aaKnown RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 E2F3O00716 465 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 GPR39O43194 453 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 CD2P06729 351 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 CAPN3P20807 821 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 ITGB8P26012 769 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 AK4P27144 223 aaPredicted RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 SLC6A12P48065 614 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 PXNP49023 591 aaPredicted RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 POU6F2P78424 691 aaPredicted RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 SLAMF1Q13291 335 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 ZNF542PQ5EBM4 170 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 TRIM61Q5EBN2 209 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 ABHD11Q8NFV4 315 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 B4GALNT2Q8NHY0 566 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 HS6ST2Q96MM7 605 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 U3KQV3 271 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 SPTY2D1-AS1A0A0U1RR47 76 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 BTN3A3O00478 584 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 OR2T1O43869 369 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 PSMA1P25786 263 aaKnown RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 CSNK1EP49674 416 aaKnown RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 SEPHS1P49903 392 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 TAS2R38P59533 333 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 BPHLQ86WA6 291 aaPredicted RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 CACTIN-AS1Q8N1I8 211 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 CRIPAKQ8N1N5 446 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 FAM156AQ8NDB6 213 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 OR8J1Q8NGP2 316 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 SERINC2Q96SA4 455 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 C1QTNF1Q9BXJ1 281 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 KLHL25Q9H0H3 589 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 PCDHAC1Q9H158 963 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 ADAM30Q9UKF2 790 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 MGAT4BQ9UQ53 548 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 POFUT2Q9Y2G5 429 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 MED31Q9Y3C7 131 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 EFCAB10A6NFE3 127 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 LILRA5A6NI73 299 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 H0YC42 278 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 LSM1O15116 133 aaKnown RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 CASC3O15234 703 aaKnown RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 KLK8O60259 260 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 BCL10O95999 233 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 HOXC4P09017 264 aaPredicted RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 ENPP2Q13822 863 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 SMAD2Q15796 467 aaKnown RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 PYCR3Q53H96 274 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 SPANXN2Q5MJ10 180 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 HDDC2Q7Z4H3 204 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 MCATQ8IVS2 390 aaKnown RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 TMEFF1Q8IYR6 380 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 PNPLA1Q8N8W4 532 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 LMNTD1Q8N9Z9 388 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 ZNF540Q8NDQ6 660 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 OR8K5Q8NH50 307 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 ELF4Q99607 663 aaPredicted RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 TM9SF3Q9HD45 589 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 DMRT3Q9NQL9 472 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 PCDHGB7Q9Y5F8 929 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 DLEC1Q9Y238 1755 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 MCIDASD6RGH6 385 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 RNASET2O00584 256 aaKnown RBP6.55□□□□□ -1.36
SF3B1-201ENST00000335508 NDUFB5O43674 189 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 C9P02748 559 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 HSD17B7P56937 341 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 SNAPC1Q16533 368 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 ZCCHC12Q6PEW1 402 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 TMPRSS11AQ6ZMR5 421 aa6.55□□□□□ -1.36
SF3B1-201ENST00000335508 MCHR1Q99705 422 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms