RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 CLNKQ7Z7G1 428 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 TMEM132CQ8N3T6 1108 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 DNAJB14Q8TBM8 379 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 PNPLA2Q96AD5 504 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 ZNF354BQ96LW1 612 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 TRMOQ9BU70 441 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 ZNF717Q9BY31 904 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-201ENST00000332345 MRPL1Q9BYD6 325 aaKnown RBP13.12□□□□□ -0.31
LIMS1-201ENST00000332345 ADAP2Q9NPF8 381 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 SLC17A7Q9P2U7 560 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 VTI1BQ9UEU0 232 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 ATG4BQ9Y4P1 393 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 TIMM22Q9Y584 194 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 CLCA3PQ9Y6N3 262 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 CFAP46Q8IYW2 2715 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 SERTM1A2A2V5 107 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 TTLL8A6PVC2 850 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 UBFD1O14562 309 aaKnown RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 TYROBPO43914 113 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 TMPRSS11DO60235 418 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 LDB3O75112 727 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 MYO1DO94832 1006 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 CREB1P16220 341 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 TNNI3P19429 210 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 ALDH3A1P30838 453 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 SOX11P35716 441 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 HNRNPH2P55795 449 aaKnown RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 TNFRSF17Q02223 184 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 ELAVL1Q15717 326 aaKnown RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 MEP1AQ16819 746 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 PLEKHN1Q494U1 663 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 SLC6A19Q695T7 634 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 COMMD6Q7Z4G1 85 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 EXOC3L1Q86VI1 746 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 SLC5A8Q8N695 610 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 NFAM1Q8NET5 270 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 ELP5Q8TE02 316 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 HAS2Q92819 552 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 DAZLQ92904 295 aaKnown RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 PGM2Q96G03 612 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 RBM18Q96H35 190 aaKnown RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 GATA5Q9BWX5 397 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 ILKAPQ9H0C8 392 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 STMN4Q9H169 189 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 EML4Q9HC35 981 aaKnown RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 SSU72Q9NP77 194 aaKnown RBP13.11□□□□□ -0.31
LIMS1-201ENST00000332345 ABI3Q9P2A4 366 aa13.11□□□□□ -0.31
LIMS1-201ENST00000332345 A0A1W2PR48 441 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 TGFBR3LH3BV60 316 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 DYRK3O43781 588 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 NPHS1O60500 1241 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 GPR75O95800 540 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 GBAP04062 536 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 NR2F6P10588 404 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 UROSP10746 265 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 COX7A2P14406 83 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 PLA2G2AP14555 144 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 TPP2P29144 1249 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-201ENST00000332345 CLCN2P51788 898 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 MAPK12P53778 367 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 ARG2P78540 354 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 TBL3Q12788 808 aaKnown RBP13.1□□□□□ -0.31
LIMS1-201ENST00000332345 TLR1Q15399 786 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 TCHHL1Q5QJ38 904 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-201ENST00000332345 B3GNTL1Q67FW5 361 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-201ENST00000332345 C18orf63Q68DL7 685 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 Q6ZS92 163 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 B3GNT7Q8NFL0 401 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 CHTF18Q8WVB6 975 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 ANKRD9Q96BM1 317 aaPredicted RBP13.1□□□□□ -0.31
LIMS1-201ENST00000332345 KCNA7Q96RP8 456 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 HBEGFQ99075 208 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 DEFB126Q9BYW3 111 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 CLDN16Q9Y5I7 305 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 ACTL7BQ9Y614 415 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 ZNF462Q96JM2 2506 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 CROCCQ5TZA2 2017 aa13.1□□□□□ -0.31
LIMS1-201ENST00000332345 GOLGA6L10A6NI86 522 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 CDK2AP1O14519 115 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 TM9SF1O15321 606 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 SERPINB5P36952 375 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 CD97P48960 835 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 TRA2BP62995 288 aaKnown RBP13.09□□□□□ -0.31
LIMS1-201ENST00000332345 FOLH1Q04609 750 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 TLE1Q04724 770 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 ACSM2AQ08AH3 577 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 GALNT1Q10472 559 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-201ENST00000332345 IMPG1Q17R60 797 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 SPIN4Q56A73 249 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 TNFAIP8L3Q5GJ75 292 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 COLEC12Q5KU26 742 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 SPDYAQ5MJ70 313 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 ACER2Q5QJU3 275 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 ACSM2BQ68CK6 577 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 RPS19BP1Q86WX3 136 aaKnown RBP13.09□□□□□ -0.31
LIMS1-201ENST00000332345 NUDCD3Q8IVD9 361 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 OR4N5Q8IXE1 308 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 C1orf52Q8N6N3 182 aaKnown RBP13.09□□□□□ -0.31
LIMS1-201ENST00000332345 MORN4Q8NDC4 146 aa13.09□□□□□ -0.31
LIMS1-201ENST00000332345 OR14A16Q8NHC5 309 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms