RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PUM1Q14671 1186 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS39-201ENST00000318006 PTPRCAPQ14761 206 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 CCDC58Q4VC31 144 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 STEAP4Q687X5 459 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 KCTD9Q7L273 389 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 SPARTQ8N0X7 666 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 KCNJ9Q92806 393 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 OSTF1Q92882 214 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 TM9SF2Q99805 663 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 HERPUD2Q9BSE4 406 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 PPA2Q9H2U2 334 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 RHCGQ9UBD6 479 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 PSMD9O00233 223 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 COCHO43405 550 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 GRID2O43424 1007 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 HSD17B2P37059 387 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 SP140Q13342 867 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 PON3Q15166 354 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 UNC50Q53HI1 259 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 CELF5Q8N6W0 485 aaKnown RBP11.06□□□□□ -0.64
VPS39-201ENST00000318006 ZSCAN1Q8NBB4 408 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 PSKH2Q96QS6 385 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 NELL2Q99435 816 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 ERVK-19Q9WJR5 959 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 SLC22A14Q9Y267 594 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 LTBP4Q8N2S1 1624 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 UPK3BL1B0FP48 263 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 UPK3BL2E5RIL1 263 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 FGF18O76093 207 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 SPARCP09486 303 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 IGFALSP35858 605 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 GDF5P43026 501 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 COL28A1Q2UY09 1125 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 REEP3Q6NUK4 255 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 Q6ZNX1 250 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 SGCDQ92629 289 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 ARMC5Q96C12 935 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 OR4K3Q96R72 315 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 RGCCQ9H4X1 137 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 RNF11Q9Y3C5 154 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 A0A1B0GVI7 797 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 RBBP9O75884 186 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 TGFB1P01137 390 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 SLC10A3P09131 477 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 MPIP34949 423 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 OR1E2P47887 323 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 CRISP1P54107 249 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 NIPAL4Q0D2K0 466 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 TOMM20Q15388 145 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 FAM189A2Q15884 450 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 RAB6CQ53S08 254 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.06□□□□□ -0.64
VPS39-201ENST00000318006 TMEM135Q86UB9 458 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 OR6Q1Q8NGQ2 317 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 RHEBL1Q8TAI7 183 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 PEX13Q92968 403 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 COQ8BQ96D53 544 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 LMLNQ96KR4 655 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 RANBP9Q96S59 729 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 CD180Q99467 661 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 CCM2Q9BSQ5 444 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 SYT11Q9BT88 431 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 RAB11FIP5Q9BXF6 653 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 RAB6CQ9H0N0 254 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 NSUN3Q9H649 340 aaKnown RBP11.06□□□□□ -0.64
VPS39-201ENST00000318006 GPN2Q9H9Y4 310 aaPredicted RBP11.06□□□□□ -0.64
VPS39-201ENST00000318006 INTS6Q9UL03 887 aaKnown RBP11.06□□□□□ -0.64
VPS39-201ENST00000318006 WNT6Q9Y6F9 365 aa11.06□□□□□ -0.64
VPS39-201ENST00000318006 SH3D21A4FU49 640 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 C1orf196B1AJZ1 125 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 ZNF670-ZNF695F2Z2N8 137 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 RPP14O95059 124 aaKnown RBP11.05□□□□□ -0.64
VPS39-201ENST00000318006 GJB5O95377 273 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 PAK4O96013 591 aaPredicted RBP11.05□□□□□ -0.64
VPS39-201ENST00000318006 TYRP14679 529 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 CSNK2A2P19784 350 aaPredicted RBP11.05□□□□□ -0.64
VPS39-201ENST00000318006 EVI2BP34910 448 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 RGS19P49795 217 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 FGL1Q08830 312 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 CDK5R2Q13319 367 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 EXOC3L2Q2M3D2 409 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 HSDL2Q6YN16 418 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 GDPGP1Q6ZNW5 385 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 OR2T35Q8NGX2 323 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 CASTOR1Q8WTX7 329 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 KLK6Q92876 244 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 MRGPRX2Q96LB1 330 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 ADAD1Q96M93 576 aaKnown RBP11.05□□□□□ -0.64
VPS39-201ENST00000318006 RETREG1Q9H6L5 497 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 WDR26Q9H7D7 661 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 NEUROD4Q9HD90 331 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 RIMS3Q9UJD0 308 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 KRT33AO76009 404 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 AGR2O95994 175 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 LCKP06239 509 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 PET100P0DJ07 73 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 LRRC37A5PQ49AS3 106 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 YIPF7Q8N8F6 280 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 OR5T3Q8NGG3 340 aa11.05□□□□□ -0.64
VPS39-201ENST00000318006 THRSPQ92748 146 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms