RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 WDR26Q9H7D7 661 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 WDR45Q9Y484 360 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 CD8B2A6NJW9 211 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 A8MXE2 369 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 FMO6PO60774 539 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 CD8BP10966 210 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 MAP2K5Q13163 448 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 PPA2Q9H2U2 334 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 CRTAC1Q9NQ79 661 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF821O75541 412 aaPredicted RBP13.35□□□□□ -0.27
CSPG4-201ENST00000308508 RFPL3O75679 317 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 CCNOP22674 350 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 CHRNA4P43681 627 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 HLCSP50747 726 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 FGFBP1Q14512 234 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 RBM23Q86U06 439 aaKnown RBP13.35□□□□□ -0.27
CSPG4-201ENST00000308508 BBS10Q8TAM1 723 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 TFAP2BQ92481 460 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 SLC41A3Q96GZ6 507 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 SLC25A44Q96H78 314 aaPredicted RBP13.35□□□□□ -0.27
CSPG4-201ENST00000308508 DPEP3Q9H4B8 488 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 UBE2J1Q9Y385 318 aaPredicted RBP13.35□□□□□ -0.27
CSPG4-201ENST00000308508 A0A096LPI6 279 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 CAPN15O75808 1086 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 TFP02787 698 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 H2BFMP0C1H6 154 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 CHRNB1P11230 501 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 CKMT1AP12532 417 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 AGXTP21549 392 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 MRPL49Q13405 166 aaKnown RBP13.35□□□□□ -0.27
CSPG4-201ENST00000308508 ITPRIPL2Q3MIP1 535 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 BRAT1Q6PJG6 821 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 DNAAF1Q8NEP3 725 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 FRZBQ92765 325 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 TWNKQ96RR1 684 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 CD244Q9BZW8 370 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 POT1Q9NUX5 634 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 KLHL9Q9P2J3 617 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 SLC31A1O15431 190 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 ARL2P36404 184 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 SELENOVP59797 346 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 LAPTM4AQ15012 233 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 PIM3Q86V86 326 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 LRRTM4Q86VH4 590 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 GOLM1Q8NBJ4 401 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 OR6C4Q8NGE1 309 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 OR6Q1Q8NGQ2 317 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 SLC5A11Q8WWX8 675 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 MAF1Q9H063 256 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 EBF1Q9UH73 591 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 TARBP1Q13395 1621 aaKnown RBP13.35□□□□□ -0.27
CSPG4-201ENST00000308508 LOC730098B7Z3J9 87 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 AOC2O75106 756 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 DYRK1AQ13627 763 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 NOXRED1Q6NXP6 359 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 C3P1Q6ZMU1 363 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 GPN2Q9H9Y4 310 aaPredicted RBP13.35□□□□□ -0.27
CSPG4-201ENST00000308508 RHCGQ9UBD6 479 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 ARHGAP23Q9P227 1491 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 CDK1P06493 297 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 ERVK-25P63136 954 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 CDK3Q00526 305 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 PLGLB1Q02325 96 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 PCDHA2Q9Y5H9 948 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 LILRB5O75023 590 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 OXSR1O95747 527 aaPredicted RBP13.35□□□□□ -0.27
CSPG4-201ENST00000308508 OR4Q2P0C623 313 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 NKX2-5P52952 324 aaPredicted RBP13.35□□□□□ -0.27
CSPG4-201ENST00000308508 CCL23P55773 120 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 GAD2Q05329 585 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 GDPD4Q6W3E5 623 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 OR13J1Q8NGT2 312 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 TXN2Q99757 166 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 CNOT11Q9UKZ1 510 aaKnown RBP13.35□□□□□ -0.27
CSPG4-201ENST00000308508 ASB4Q9Y574 426 aa13.35□□□□□ -0.27
CSPG4-201ENST00000308508 TCRBV7S3A2A0A539 114 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 UNC119BA6NIH7 251 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 VEGFAP15692 232 aaPredicted RBP13.34□□□□□ -0.27
CSPG4-201ENST00000308508 CHATP28329 748 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 HTR1EP28566 365 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 OR1E2P47887 323 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 CARD16Q5EG05 197 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 TMIGD1Q6UXZ0 262 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 VWA5B2Q8N398 1253 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 FAM118AQ9NWS6 357 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 PCDHB3Q9Y5E6 796 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 SNAPINO95295 136 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 PROZP22891 400 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 WASP42768 502 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 SNRPD2P62316 118 aaKnown RBP13.34□□□□□ -0.27
CSPG4-201ENST00000308508 MC2RQ01718 297 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 NIPAL4Q0D2K0 466 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 DCAF12L1Q5VU92 463 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF283Q8N7M2 679 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 SMPDL3AQ92484 453 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF486Q96H40 463 aaPredicted RBP13.34□□□□□ -0.27
CSPG4-201ENST00000308508 SYT3Q9BQG1 590 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 TTTY10Q9BZA0 68 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 RXFP3Q9NSD7 469 aa13.34□□□□□ -0.27
CSPG4-201ENST00000308508 GFOD1Q9NXC2 390 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms