RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FBXW2Q9UKT8 454 aa14.73□□□□□ -0.05
SHH-201ENST00000297261 DRGXA6NNA5 263 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 PLATP00750 562 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 STK19P49842 368 aaPredicted RBP14.72□□□□□ -0.05
SHH-201ENST00000297261 PPP3R1P63098 170 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 GRSF1Q12849 480 aaKnown RBP eCLIP14.72□□□□□ -0.05
SHH-201ENST00000297261 ZNF234Q14588 700 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 ZNF630Q2M218 657 aaPredicted RBP14.72□□□□□ -0.05
SHH-201ENST00000297261 KDELC1Q6UW63 502 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 SRFBP1Q8NEF9 429 aaKnown RBP14.72□□□□□ -0.05
SHH-201ENST00000297261 OR9Q2Q8NGE9 314 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 GATAD2BQ8WXI9 593 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 DNASE1L2Q92874 299 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 MGAT4AQ9UM21 535 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 AXIN1O15169 862 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 CAPN5O15484 640 aaPredicted RBP14.72□□□□□ -0.05
SHH-201ENST00000297261 OR1F1O43749 312 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 RHOP08100 348 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 CHRNB1P11230 501 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 PIGAP37287 484 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 WASP42768 502 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 CLDN8P56748 225 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 RPS13P62277 151 aaKnown RBP14.72□□□□□ -0.05
SHH-201ENST00000297261 KCNC4Q03721 635 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 LARS2Q15031 903 aaKnown RBP14.72□□□□□ -0.05
SHH-201ENST00000297261 NADSYN1Q6IA69 706 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 SLC25A25Q6KCM7 469 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 NCEH1Q6PIU2 408 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 RTL4Q6ZR62 310 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 HMGN2P46Q86SG4 172 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 OAFQ86UD1 273 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 CXorf40AQ8TE69 158 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 MNTQ99583 582 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 J3QLW9 94 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 LDB2O43679 373 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 ZNF19P17023 458 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 HNMTP50135 292 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 BCL2L15Q5TBC7 163 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 SPAG16Q8N0X2 631 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 OR8J1Q8NGP2 316 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 WRAP53Q9BUR4 548 aaKnown RBP14.72□□□□□ -0.05
SHH-201ENST00000297261 ZDHHC3Q9NYG2 299 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 FAM170BA6NMN3 283 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 ETFAP13804 333 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 RGS6P49758 472 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 AP1S2P56377 157 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 CAMK1Q14012 370 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 APCDD1Q8J025 514 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 NXPE1Q8N323 547 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 SGCDQ92629 289 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 CCDC115Q96NT0 180 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 NEURL2Q9BR09 285 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 TTTY10Q9BZA0 68 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 CD93Q9NPY3 652 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 ACSL6Q9UKU0 697 aa14.72□□□□□ -0.05
SHH-201ENST00000297261 LOC285556D6RIA3 1793 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 DICER1Q9UPY3 1922 aaKnown RBP14.71□□□□□ -0.05
SHH-201ENST00000297261 A0A0U1RQS6 177 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 C1QTNF3-AMACRE9PGA6 284 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 RAB36O95755 333 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 PRKACAP17612 351 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 ARL4DP49703 201 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 SLC35F1Q5T1Q4 408 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 HSDL2Q6YN16 418 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 THOC6Q86W42 341 aaKnown RBP14.71□□□□□ -0.05
SHH-201ENST00000297261 OR6K6Q8NGW6 343 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 LRR1Q96L50 414 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 RANBP3Q9H6Z4 567 aaPredicted RBP14.71□□□□□ -0.05
SHH-201ENST00000297261 LTB4R2Q9NPC1 389 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 POLE3Q9NRF9 147 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 OR10H1Q9Y4A9 318 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 PCDHA9Q9Y5H5 950 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 ARID2Q68CP9 1835 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 GJB3O75712 270 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 RB1P06400 928 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 NTRK2Q16620 822 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 OR51G2Q8NGK0 314 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 SLCO4A1Q96BD0 722 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 GPRC5BQ9NZH0 403 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 STUB1Q9UNE7 303 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 DLGAP4Q9Y2H0 992 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 RLFQ13129 1914 aa14.71□□□□□ -0.05
SHH-201ENST00000297261 A0A1W2PPK0 400 aa14.71□□□□□ -0.06
SHH-201ENST00000297261 I6L893 689 aaPredicted RBP14.71□□□□□ -0.06
SHH-201ENST00000297261 IFNA6P05013 189 aa14.71□□□□□ -0.06
SHH-201ENST00000297261 SGCGQ13326 291 aa14.71□□□□□ -0.06
SHH-201ENST00000297261 LRRC26Q2I0M4 334 aa14.71□□□□□ -0.06
SHH-201ENST00000297261 REEP3Q6NUK4 255 aa14.71□□□□□ -0.06
SHH-201ENST00000297261 C22orf39Q6P5X5 142 aa14.71□□□□□ -0.06
SHH-201ENST00000297261 SLC22A15Q8IZD6 547 aa14.71□□□□□ -0.06
SHH-201ENST00000297261 ATP6V1C2Q8NEY4 427 aa14.71□□□□□ -0.06
SHH-201ENST00000297261 NELL2Q99435 816 aa14.71□□□□□ -0.06
SHH-201ENST00000297261 TRMT61BQ9BVS5 477 aaKnown RBP14.71□□□□□ -0.06
SHH-201ENST00000297261 CACNG6Q9BXT2 260 aa14.71□□□□□ -0.06
SHH-201ENST00000297261 HIST1H2ABP04908 130 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 KCTD11Q693B1 232 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 AGTRAPQ6RW13 159 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 HIST3H2AQ7L7L0 130 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 KIF18BQ86Y91 864 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 DENND6BQ8NEG7 585 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms