RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 NCS1P62166 190 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 CSNK1G2P78368 415 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 PUM1Q14671 1186 aaKnown RBP eCLIP19.08■□□□□ 0.64
VPS53-201ENST00000291074 REEP3Q6NUK4 255 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 NEURL3Q96EH8 262 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 COPS4Q9BT78 406 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 AICDAQ9GZX7 198 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 RSPH9Q9H1X1 276 aaPredicted RBP19.08■□□□□ 0.64
VPS53-201ENST00000291074 SPATA7Q9P0W8 599 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 ENPP4Q9Y6X5 453 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 DNAH14Q0VDD8 3507 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 PRKRAO75569 313 aaKnown RBP19.08■□□□□ 0.64
VPS53-201ENST00000291074 GADD45GO95257 159 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 IFNA14P01570 189 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 HOXB3P14651 431 aaPredicted RBP19.08■□□□□ 0.64
VPS53-201ENST00000291074 ST13P50502 369 aaKnown RBP19.08■□□□□ 0.64
VPS53-201ENST00000291074 OCA2Q04671 838 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 HEPACAMQ14CZ8 416 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 PAGE2Q7Z2X7 111 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 ZNF605Q86T29 641 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 NUDT13Q86X67 352 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 OR5P2Q8WZ92 322 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 PDXPQ96GD0 296 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 TMEM19Q96HH6 336 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 TRPV4Q9HBA0 871 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 ZNF226Q9NYT6 803 aa19.08■□□□□ 0.64
VPS53-201ENST00000291074 FAM32AQ9Y421 112 aaKnown RBP19.08■□□□□ 0.64
VPS53-201ENST00000291074 OR52A4PA6NMU1 304 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 SH3BP5O60239 455 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 LIM2P55344 173 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 SPDYE7PQ495Y7 208 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 Q6ZNX1 250 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 BTLAQ7Z6A9 289 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 SLCO6A1Q86UG4 719 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 IPCEF1Q8WWN9 437 aaPredicted RBP19.07■□□□□ 0.64
VPS53-201ENST00000291074 TEFMQ96QE5 360 aaKnown RBP19.07■□□□□ 0.64
VPS53-201ENST00000291074 C17orf62Q9BQA9 187 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 SLC6A17Q9H1V8 727 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 MTIF3Q9H2K0 278 aaKnown RBP19.07■□□□□ 0.64
VPS53-201ENST00000291074 DNAAF2Q9NVR5 837 aaKnown RBP19.07■□□□□ 0.64
VPS53-201ENST00000291074 OBP2AQ9NY56 170 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 MOSPD1Q9UJG1 213 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 OR2A25A4D2G3 310 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 C5orf58C9J3I9 102 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 LIMS1P48059 325 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 TP53BP2Q13625 1128 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 TMEM236Q5W0B7 351 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 SZRD1Q7Z422 152 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 C6orf120Q7Z4R8 191 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 YAF2Q8IY57 180 aa19.07■□□□□ 0.64
VPS53-201ENST00000291074 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP19.07■□□□□ 0.64
VPS53-201ENST00000291074 YBX2Q9Y2T7 364 aaKnown RBP19.07■□□□□ 0.64
VPS53-201ENST00000291074 FFAR1O14842 300 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 IFNW1P05000 195 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 IDUAP35475 653 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 HSD17B2P37059 387 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 TGFBR2P37173 567 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 PBX2P40425 430 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 PCBP4P57723 403 aaKnown RBP19.06■□□□□ 0.64
VPS53-201ENST00000291074 NR1D2Q14995 579 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 MAPK11Q15759 364 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 SYT16Q17RD7 645 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 ZNF513Q8N8E2 541 aaPredicted RBP19.06■□□□□ 0.64
VPS53-201ENST00000291074 AQP11Q8NBQ7 271 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 TP53I13Q8NBR0 393 aaPredicted RBP19.06■□□□□ 0.64
VPS53-201ENST00000291074 GPR32P1Q8NGA4 272 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 RHOXF1Q8NHV9 184 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 PHF10Q8WUB8 498 aaKnown RBP19.06■□□□□ 0.64
VPS53-201ENST00000291074 PCBD2Q9H0N5 130 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 SERHL2Q9H4I8 314 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 FZD3Q9NPG1 666 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 PSORS1C1Q9UIG5 152 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 MDC1Q14676 2089 aaKnown RBP19.06■□□□□ 0.64
VPS53-201ENST00000291074 OLIG3Q7RTU3 272 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 DNAJC22Q8N4W6 341 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 RGMAQ96B86 450 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 OTUB1Q96FW1 271 aaPredicted RBP19.06■□□□□ 0.64
VPS53-201ENST00000291074 CAMK1GQ96NX5 476 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 RPP25Q9BUL9 199 aaKnown RBP19.06■□□□□ 0.64
VPS53-201ENST00000291074 GPR83Q9NYM4 423 aa19.06■□□□□ 0.64
VPS53-201ENST00000291074 DNMT3AQ9Y6K1 912 aaPredicted RBP19.06■□□□□ 0.64
VPS53-201ENST00000291074 TIE1P35590 1138 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 TRIM23P36406 574 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 PXNP49023 591 aaPredicted RBP19.05■□□□□ 0.64
VPS53-201ENST00000291074 ERVK-21P61565 698 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 TCEA2Q15560 299 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 KIAA1211LQ6NV74 962 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 OR2A1Q8NGT9 310 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 GANCQ8TET4 914 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 SNRNP27Q8WVK2 155 aaKnown RBP19.05■□□□□ 0.64
VPS53-201ENST00000291074 APOBEC4Q8WW27 367 aaKnown RBP19.05■□□□□ 0.64
VPS53-201ENST00000291074 GGHQ92820 318 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 ALPK1Q96QP1 1244 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 WFDC6Q9BQY6 131 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 KLHL31Q9H511 634 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 ACSL5Q9ULC5 683 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 HCN4Q9Y3Q4 1203 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 CEP290O15078 2479 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 GLOD5A6NK44 160 aa19.05■□□□□ 0.64
VPS53-201ENST00000291074 M0R3G1 203 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms