RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 HORMAD2Q8N7B1 307 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 AMER3Q8N944 861 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 SRFBP1Q8NEF9 429 aaKnown RBP12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 CNIH3Q8TBE1 160 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 LCN9Q8WX39 176 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 MS4A6EQ96DS6 147 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 MAGED4Q96JG8 741 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 KCNC2Q96PR1 638 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 SARGQ9BW04 601 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 AICDAQ9GZX7 198 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 KLHL31Q9H511 634 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 EXD2Q9NVH0 621 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 ZSCAN32Q9NX65 697 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 SPHK1Q9NYA1 384 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 EBF1Q9UH73 591 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 CDC14AQ9UNH5 594 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 FAM32AQ9Y421 112 aaKnown RBP12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 SNX5Q9Y5X3 404 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 SNRNP200O75643 2136 aaKnown RBP12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 MDC1Q14676 2089 aaKnown RBP12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 LRRC72A6NJI9 287 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 PDE9AO76083 593 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 ANGPTL1O95841 491 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 BCHEP06276 602 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 CHRM5P08912 532 aaPredicted RBP12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 NDUFV2P19404 249 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 AK4P27144 223 aaPredicted RBP12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 NTSP30990 170 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 ACSL1P33121 698 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 CCT3P49368 545 aaKnown RBP12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 RPS26P62854 115 aaKnown RBP12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 NPRL3Q12980 569 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 SLAMF1Q13291 335 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 TOR1AIP1Q5JTV8 583 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 LAIR2Q6ISS4 152 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 TNFAIP8L2Q6P589 184 aaPredicted RBP12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 TSPYL5Q86VY4 417 aaPredicted RBP12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 SMYD1Q8NB12 490 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 MFSD9Q8NBP5 474 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 SMRP1Q8NCR6 262 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 BPIFB6Q8NFQ5 453 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 OR2L5Q8NG80 312 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 OR4E2Q8NGC2 313 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 OR13F1Q8NGS4 319 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 RPLP0P6Q8NHW5 317 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 PSMA8Q8TAA3 256 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 C12orf43Q96C57 262 aaKnown RBP12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 SIRT3Q9NTG7 399 aaPredicted RBP12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 NDRG4Q9ULP0 352 aaKnown RBP12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 CA5BQ9Y2D0 317 aa12.27□□□□□ -0.44
SPTLC1-201ENST00000262554 CEP290O15078 2479 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 TMEM247A6NEH6 219 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 PTGES3LE9PB15 166 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 H0Y8X5 98 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 TNFRSF10CO14798 259 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 PPM1DO15297 605 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 PRAMEF10O60809 474 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 DNAJB5O75953 348 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 SEC14L2O76054 403 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 STATHP02808 62 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 ANXA8P13928 327 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 HIST1H1TP22492 207 aaPredicted RBP12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 GPC1P35052 558 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 TPMTP51580 245 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 CDH12P55289 794 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 HYAL2Q12891 473 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 TP53BP2Q13625 1128 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 XAF1Q6GPH4 301 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 ABHD17CQ6PCB6 329 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 SLC38A5Q8WUX1 472 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 JPH3Q8WXH2 748 aaPredicted RBP12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 TSACCQ96A04 125 aaPredicted RBP12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 BMFQ96LC9 184 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 BBS4Q96RK4 519 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 NODALQ96S42 347 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 DOK1Q99704 481 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 PIP5K1AQ99755 562 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 MACROD1Q9BQ69 325 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 GABARAPL3Q9BY60 117 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 LIN28AQ9H9Z2 209 aaKnown RBP12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 TIMMDC1Q9NPL8 285 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 CD93Q9NPY3 652 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 SLC35C2Q9NQQ7 365 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 SCN3BQ9NY72 215 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 TMEM9Q9P0T7 183 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 PCOLCE2Q9UKZ9 415 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 SH3GLB1Q9Y371 365 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 TPRKBQ9Y3C4 175 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 PCDHGA4Q9Y5G9 962 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 PCDHGA2Q9Y5H1 932 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 F5P12259 2224 aa12.27□□□□□ -0.45
SPTLC1-201ENST00000262554 TCRBV21S2A2A0A5A6 115 aa12.26□□□□□ -0.45
SPTLC1-201ENST00000262554 MAN2B1O00754 1011 aa12.26□□□□□ -0.45
SPTLC1-201ENST00000262554 IFNW1P05000 195 aa12.26□□□□□ -0.45
SPTLC1-201ENST00000262554 HTR1AP08908 422 aa12.26□□□□□ -0.45
SPTLC1-201ENST00000262554 TFPTP0C1Z6 253 aa12.26□□□□□ -0.45
SPTLC1-201ENST00000262554 HOXB3P14651 431 aaPredicted RBP12.26□□□□□ -0.45
SPTLC1-201ENST00000262554 ATP5A1P25705 553 aaKnown RBP12.26□□□□□ -0.45
SPTLC1-201ENST00000262554 ACTR1BP42025 376 aa12.26□□□□□ -0.45
SPTLC1-201ENST00000262554 TSFMP43897 325 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms