RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PLPP1O14494 284 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 SNPHO15079 494 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 RECKO95980 971 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 PNLIPRP1P54315 467 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 PRAMEF14Q5SWL7 426 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 PRAMEF13Q5VWM6 474 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 ZDHHC20Q5W0Z9 365 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 MSANTD1Q6ZTZ1 278 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 COMTD1Q86VU5 262 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 ARMC8Q8IUR7 673 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 OR4C15Q8NGM1 316 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 CEP19Q96LK0 163 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 SMAD5Q99717 465 aaKnown RBP20.3■□□□□ 0.84
TRIM28-201ENST00000253024 EQTNQ9NQ60 294 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 CXXC1Q9P0U4 656 aaPredicted RBP20.3■□□□□ 0.84
TRIM28-201ENST00000253024 AP3D1O14617 1153 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 UGDHO60701 494 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 UPK1BO75841 260 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 HOXC5Q00444 222 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 MLLT1Q03111 559 aaPredicted RBP20.29■□□□□ 0.84
TRIM28-201ENST00000253024 TARDBPQ13148 414 aaKnown RBP eCLIP20.29■□□□□ 0.84
TRIM28-201ENST00000253024 DHCR24Q15392 516 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 LILRA6Q6PI73 481 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 CCDC149Q6ZUS6 474 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 NUS1Q96E22 293 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 EHD1Q9H4M9 534 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 MVB12BQ9H7P6 319 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 GPR52Q9Y2T5 361 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 HCN4Q9Y3Q4 1203 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.29■□□□□ 0.84
TRIM28-201ENST00000253024 ANHXE9PGG2 379 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 ARHGAP33O14559 1287 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 B4GALT2O60909 372 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 OR12D1P0DN82 309 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 ANXA8P13928 327 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 CDC42P60953 191 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 DGLUCYQ7Z3D6 616 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 ZFP41Q8N8Y5 198 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 CEP44Q9C0F1 390 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 BHLHE41Q9C0J9 482 aaPredicted RBP20.29■□□□□ 0.84
TRIM28-201ENST00000253024 YARS2Q9Y2Z4 477 aaKnown RBP20.29■□□□□ 0.84
TRIM28-201ENST00000253024 OR1A2Q9Y585 309 aa20.29■□□□□ 0.84
TRIM28-201ENST00000253024 SPINT1O43278 529 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 SLC28A2O43868 658 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 FKTNO75072 461 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 SELENBP1Q13228 472 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 KCNJ8Q15842 424 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 FAM71E1Q6IPT2 247 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 AMER2Q8N7J2 671 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 ANKRD53Q8N9V6 530 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 ARMC5Q96C12 935 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 TRMT61AQ96FX7 289 aaKnown RBP20.28■□□□□ 0.84
TRIM28-201ENST00000253024 SIGLEC11Q96RL6 698 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 CLDN24A6NM45 220 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 AP2A2O94973 939 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 GPC1P35052 558 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 LIPKQ5VXJ0 399 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 TMC5Q6UXY8 1006 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 GEMIN6Q8WXD5 167 aaKnown RBP20.28■□□□□ 0.84
TRIM28-201ENST00000253024 SEMA3GQ9NS98 782 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 OBSL1O75147 1896 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 OR1F1O43749 312 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 GPX5O75715 221 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 MAP4K2Q12851 820 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 KCNC3Q14003 757 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 METTL4Q8N3J2 472 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 GPR32P1Q8NGA4 272 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 CAPSLQ8WWF8 208 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 DTD2Q96FN9 168 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 C17orf62Q9BQA9 187 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 TRMT61BQ9BVS5 477 aaKnown RBP20.28■□□□□ 0.84
TRIM28-201ENST00000253024 TOR4AQ9NXH8 423 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 ANGPT4Q9Y264 503 aa20.28■□□□□ 0.84
TRIM28-201ENST00000253024 TCF20Q9UGU0 1960 aaKnown RBP20.27■□□□□ 0.84
TRIM28-201ENST00000253024 DNAJB5O75953 348 aa20.27■□□□□ 0.84
TRIM28-201ENST00000253024 FHP07954 510 aa20.27■□□□□ 0.84
TRIM28-201ENST00000253024 SSTR4P31391 388 aa20.27■□□□□ 0.84
TRIM28-201ENST00000253024 XCR1P46094 333 aa20.27■□□□□ 0.84
TRIM28-201ENST00000253024 TBCEQ15813 527 aaPredicted RBP20.27■□□□□ 0.84
TRIM28-201ENST00000253024 FRMPD2BQ6IN97 320 aa20.27■□□□□ 0.84
TRIM28-201ENST00000253024 NEK10Q6ZWH5 1172 aa20.27■□□□□ 0.84
TRIM28-201ENST00000253024 USP43Q70EL4 1123 aa20.27■□□□□ 0.84
TRIM28-201ENST00000253024 DPPA4Q7L190 304 aa20.27■□□□□ 0.84
TRIM28-201ENST00000253024 GATAD2AQ86YP4 633 aa20.27■□□□□ 0.84
TRIM28-201ENST00000253024 TIFAQ96CG3 184 aa20.27■□□□□ 0.84
TRIM28-201ENST00000253024 CORO2BQ9UQ03 480 aa20.27■□□□□ 0.84
TRIM28-201ENST00000253024 TLX2O43763 284 aaPredicted RBP20.27■□□□□ 0.83
TRIM28-201ENST00000253024 CRISP1P54107 249 aa20.27■□□□□ 0.83
TRIM28-201ENST00000253024 CAV3P56539 151 aa20.27■□□□□ 0.83
TRIM28-201ENST00000253024 CLEC12AQ5QGZ9 265 aa20.27■□□□□ 0.83
TRIM28-201ENST00000253024 PGBD3Q8N328 593 aa20.27■□□□□ 0.83
TRIM28-201ENST00000253024 OXR1Q8N573 874 aa20.27■□□□□ 0.83
TRIM28-201ENST00000253024 TFGQ92734 400 aaPredicted RBP20.27■□□□□ 0.83
TRIM28-201ENST00000253024 OTULINQ96BN8 352 aa20.27■□□□□ 0.83
TRIM28-201ENST00000253024 TRIM43Q96BQ3 446 aaPredicted RBP20.27■□□□□ 0.83
TRIM28-201ENST00000253024 RSPRY1Q96DX4 576 aa20.27■□□□□ 0.83
TRIM28-201ENST00000253024 ZDHHC5Q9C0B5 715 aa20.27■□□□□ 0.83
TRIM28-201ENST00000253024 ENPP4Q9Y6X5 453 aa20.27■□□□□ 0.83
TRIM28-201ENST00000253024 TMEM221A6NGB7 291 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 CH25HO95992 272 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms