RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ENTPD6O75354 484 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 APOA1P02647 267 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 OSMP13725 252 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 HOXD12P35452 270 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 SLC15A1P46059 708 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 MANFP55145 182 aaKnown RBP17.82■□□□□ 0.44
CPSF3-201ENST00000238112 ST8SIA6P61647 398 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 ZNF77Q15935 545 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 VN1R5Q7Z5H4 357 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 C2orf73Q8N5S3 287 aaPredicted RBP17.82■□□□□ 0.44
CPSF3-201ENST00000238112 NEURL3Q96EH8 262 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 PPP1R16AQ96I34 528 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 IL17FQ96PD4 163 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 A4GALTQ9NPC4 353 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 EXOSC4Q9NPD3 245 aaKnown RBP17.82■□□□□ 0.44
CPSF3-201ENST00000238112 COQ9O75208 318 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 POP7O75817 140 aaKnown RBP17.82■□□□□ 0.44
CPSF3-201ENST00000238112 SNX4O95219 450 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 FGF19O95750 216 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 DDCP20711 480 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 PCYT1AP49585 367 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 DGKGP49619 791 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 MAPK12P53778 367 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 WDR5P61964 334 aaKnown RBP17.82■□□□□ 0.44
CPSF3-201ENST00000238112 NFE2L1Q14494 772 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 ARHGEF6Q15052 776 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 SSX1Q16384 188 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 DCST1Q5T197 706 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 SAXO2Q658L1 398 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 OR5P2Q8WZ92 322 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 TMEM19Q96HH6 336 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 TOX2Q96NM4 488 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 ACAT2Q9BWD1 397 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 DPEP2Q9H4A9 486 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 TMEM39AQ9NV64 488 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 ASF1AQ9Y294 204 aa17.82■□□□□ 0.44
CPSF3-201ENST00000238112 DSPPQ9NZW4 1301 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 H3BN98 237 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 OR10H3O60404 316 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 MOSPD3O75425 235 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 SOX14O95416 240 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 SPDYE7PQ495Y7 208 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 TMEM53Q6P2H8 277 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 CCBE1Q6UXH8 406 aaPredicted RBP17.81■□□□□ 0.44
CPSF3-201ENST00000238112 CCDC190Q86UF4 302 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 APOBEC4Q8WW27 367 aaKnown RBP17.81■□□□□ 0.44
CPSF3-201ENST00000238112 ZNF514Q96K75 400 aaPredicted RBP17.81■□□□□ 0.44
CPSF3-201ENST00000238112 OPALINQ96PE5 141 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 TAPBPLQ9BX59 468 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 MARK1Q9P0L2 795 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 TBX21Q9UL17 535 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 PLAGL1Q9UM63 463 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 MGAT4BQ9UQ53 548 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 PLPP1O14494 284 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 KMOO15229 486 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 PDPK1O15530 556 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 PDE9AO76083 593 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 SCG5P05408 212 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 CSTF2P33240 577 aaKnown RBP eCLIP17.81■□□□□ 0.44
CPSF3-201ENST00000238112 FEN1P39748 380 aaKnown RBP17.81■□□□□ 0.44
CPSF3-201ENST00000238112 SNRPGP62308 76 aaKnown RBP17.81■□□□□ 0.44
CPSF3-201ENST00000238112 RHAGQ02094 409 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 LCTLQ6UWM7 567 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 TRIM69Q86WT6 500 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 KRT73Q86Y46 540 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 KLHL6Q8WZ60 621 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 SLC35B4Q969S0 331 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 SLC30A2Q9BRI3 323 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 CNPPD1Q9BV87 410 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 SLC25A19Q9HC21 320 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 SAGE1Q9NXZ1 904 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 DNAJC27Q9NZQ0 273 aa17.81■□□□□ 0.44
CPSF3-201ENST00000238112 C17orf113A0A1B0GUU1 675 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 CTDSP2O14595 271 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 GPX5O75715 221 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 MFN2O95140 757 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 OXSR1O95747 527 aaPredicted RBP17.8■□□□□ 0.44
CPSF3-201ENST00000238112 EIF2S1P05198 315 aaKnown RBP17.8■□□□□ 0.44
CPSF3-201ENST00000238112 RHOP08100 348 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 PTPN2P17706 415 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 ELAVL4P26378 380 aaKnown RBP17.8■□□□□ 0.44
CPSF3-201ENST00000238112 ACADLP28330 430 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 METAP1P53582 386 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 CNTN1Q12860 1018 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 ILKQ13418 452 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 MEDAGQ5VYS4 303 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 CASP12Q6UXS9 341 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 DEF8Q6ZN54 512 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 ZNF547Q8IVP9 402 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 SLC34A3Q8N130 599 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 GPR32P1Q8NGA4 272 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 VANGL1Q8TAA9 524 aaPredicted RBP17.8■□□□□ 0.44
CPSF3-201ENST00000238112 RAD51AP1Q96B01 352 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 LINC00615Q96LM1 132 aaPredicted RBP17.8■□□□□ 0.44
CPSF3-201ENST00000238112 ZDHHC5Q9C0B5 715 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 NEUROD4Q9HD90 331 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 SLAMF7Q9NQ25 335 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 PAK6Q9NQU5 681 aaPredicted RBP17.8■□□□□ 0.44
CPSF3-201ENST00000238112 REV1Q9UBZ9 1251 aa17.8■□□□□ 0.44
CPSF3-201ENST00000238112 A0A075B6Q4 140 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms