RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 CTPS2Q9NRF8 586 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 TVP23BQ9NYZ1 205 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 CNOT2Q9NZN8 540 aaKnown RBP13.37□□□□□ -0.27
USH1C-201ENST00000005226 BACE2Q9Y5Z0 518 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 KCNE2Q9Y6J6 123 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 DOCK6Q96HP0 2047 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 FAM172BPA6NC97 362 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 RTCAO00442 366 aaKnown RBP13.37□□□□□ -0.27
USH1C-201ENST00000005226 NPPBP16860 134 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 CSTF2P33240 577 aaKnown RBP eCLIP13.37□□□□□ -0.27
USH1C-201ENST00000005226 TBPL1P62380 186 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 PSPHP78330 225 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 SLX4IPQ5VYV7 408 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 TMEM220Q6QAJ8 160 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 HORMAD2Q8N7B1 307 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 SYT14Q8NB59 555 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 GPR32P1Q8NGA4 272 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 TRMT2BQ96GJ1 504 aaKnown RBP13.37□□□□□ -0.27
USH1C-201ENST00000005226 TMEM80Q96HE8 168 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 ACAT2Q9BWD1 397 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 TSSK6Q9BXA6 273 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 UCK2Q9BZX2 261 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 C11orf54Q9H0W9 315 aaPredicted RBP13.37□□□□□ -0.27
USH1C-201ENST00000005226 MIXL1Q9H2W2 232 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 RC3H2Q9HBD1 1191 aaKnown RBP13.37□□□□□ -0.27
USH1C-201ENST00000005226 MALT1Q9UDY8 824 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 LSM7Q9UK45 103 aaKnown RBP13.37□□□□□ -0.27
USH1C-201ENST00000005226 SH3D21A4FU49 640 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 ANKDD1BA6NHY2 528 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 HEPACAM2A8MVW5 462 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 TLX2O43763 284 aaPredicted RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 CATP04040 527 aaKnown RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 URODP06132 367 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 RHCEP18577 417 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 PSMA1P25786 263 aaKnown RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 PTGER1P34995 402 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 PCBP3P57721 371 aaKnown RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 TLE2Q04725 743 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 ZNF91Q05481 1191 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 FCHO2Q0JRZ9 810 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 HNRNPA0Q13151 305 aaKnown RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 CKAP5Q14008 2032 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 LARS2Q15031 903 aaKnown RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 PAMR1Q6UXH9 720 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 CEACAM20Q6UY09 585 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 TMEM25Q86YD3 366 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 OXR1Q8N573 874 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 CAMKK1Q8N5S9 505 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 OR56A3Q8NH54 315 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 GOT1L1Q8NHS2 421 aaPredicted RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 KLHL6Q8WZ60 621 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 TMEM175Q9BSA9 504 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 MVB12BQ9H7P6 319 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 C3orf14Q9HBI5 128 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 ASAH2Q9NR71 780 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 TRAPPC4Q9Y296 219 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 PCDHGB2Q9Y5G2 931 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 A0A1W2PQL4 384 aaPredicted RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 SH3BP5O60239 455 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 UGT2B17O75795 530 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 POP4O95707 220 aaKnown RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 MYCP01106 439 aaPredicted RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 ARAFP10398 606 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 PTX3P26022 381 aaPredicted RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 EPHB3P54753 998 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 DSTNP60981 165 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 HYAL2Q12891 473 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 COL9A2Q14055 689 aaPredicted RBP13.36□□□□□ -0.27
USH1C-201ENST00000005226 CDK10Q15131 360 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 MPPE1Q53F39 396 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 GDPD4Q6W3E5 623 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 RASGRP3Q8IV61 690 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 CRIPAKQ8N1N5 446 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 IL17FQ96PD4 163 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 TMEM38AQ9H6F2 299 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 ITM2BQ9Y287 266 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 PPIL1Q9Y3C6 166 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 CMAHPQ9Y471 501 aa13.36□□□□□ -0.27
USH1C-201ENST00000005226 A0A0B4J293 547 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 HSD3B1P14060 373 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 HSD3B2P26439 372 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 ALDH9A1P49189 494 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 RUNX1T1Q06455 604 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 RBBP4Q09028 425 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 PIN1Q13526 163 aaPredicted RBP13.35□□□□□ -0.27
USH1C-201ENST00000005226 ZNF630Q2M218 657 aaPredicted RBP13.35□□□□□ -0.27
USH1C-201ENST00000005226 OR2G6Q5TZ20 316 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 FAM71E1Q6IPT2 247 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 TCTN3Q6NUS6 607 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 BRAT1Q6PJG6 821 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 ZNF438Q7Z4V0 828 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 PHC2Q8IXK0 858 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 ZFP41Q8N8Y5 198 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 CYB5D2Q8WUJ1 264 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 SLC38A5Q8WUX1 472 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 UCN3Q969E3 161 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 RNF31Q96EP0 1072 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 DIRAS2Q96HU8 199 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 SNX18Q96RF0 628 aa13.35□□□□□ -0.27
USH1C-201ENST00000005226 SLAMF7Q9NQ25 335 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms