RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 RPP38P78345 283 aaKnown RBP20.46■□□□□ 0.87
CLN6-224ENST00000638076 UAP1L1Q3KQV9 507 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 OR4C11Q6IEV9 310 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 TNFAIP8L2Q6P589 184 aaPredicted RBP20.46■□□□□ 0.87
CLN6-224ENST00000638076 HORMAD2Q8N7B1 307 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 FEVQ99581 238 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 OCEL1Q9H607 264 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 DDX31Q9H8H2 851 aaKnown RBP20.46■□□□□ 0.87
CLN6-224ENST00000638076 NEUROD4Q9HD90 331 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 CLEC1BQ9P126 229 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 ADAM29Q9UKF5 820 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 SH3GLB1Q9Y371 365 aa20.46■□□□□ 0.87
CLN6-224ENST00000638076 CACNB4O00305 520 aaPredicted RBP20.45■□□□□ 0.87
CLN6-224ENST00000638076 ADAM23O75077 832 aa20.45■□□□□ 0.87
CLN6-224ENST00000638076 ITGA2P17301 1181 aa20.45■□□□□ 0.87
CLN6-224ENST00000638076 MAD2L1BPQ15013 274 aaPredicted RBP20.45■□□□□ 0.87
CLN6-224ENST00000638076 CCDC71Q8IV32 467 aaPredicted RBP20.45■□□□□ 0.87
CLN6-224ENST00000638076 IL17RCQ8NAC3 791 aa20.45■□□□□ 0.87
CLN6-224ENST00000638076 GAB3Q8WWW8 586 aa20.45■□□□□ 0.87
CLN6-224ENST00000638076 GEMIN6Q8WXD5 167 aaKnown RBP20.45■□□□□ 0.87
CLN6-224ENST00000638076 UCN3Q969E3 161 aa20.45■□□□□ 0.87
CLN6-224ENST00000638076 MUL1Q969V5 352 aa20.45■□□□□ 0.87
CLN6-224ENST00000638076 TEFMQ96QE5 360 aaKnown RBP20.45■□□□□ 0.87
CLN6-224ENST00000638076 C17orf62Q9BQA9 187 aa20.45■□□□□ 0.87
CLN6-224ENST00000638076 S1PR5Q9H228 398 aa20.45■□□□□ 0.87
CLN6-224ENST00000638076 MRPS30Q9NP92 439 aaKnown RBP20.45■□□□□ 0.87
CLN6-224ENST00000638076 SNX11Q9Y5W9 270 aa20.45■□□□□ 0.87
CLN6-224ENST00000638076 TRIM64BA6NI03 449 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 J3KTA2 159 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 STATHP02808 62 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 JUNDP17535 347 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 COL9A1P20849 921 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 FRKP42685 505 aaPredicted RBP20.45■□□□□ 0.86
CLN6-224ENST00000638076 DLX2Q07687 328 aaPredicted RBP20.45■□□□□ 0.86
CLN6-224ENST00000638076 REEP3Q6NUK4 255 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 DHRS4L2Q6PKH6 230 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 SLC30A8Q8IWU4 369 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 OR10G2Q8NGC3 310 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 PDXPQ96GD0 296 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 PITX2Q99697 317 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 GABARAPL3Q9BY60 117 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 AICDAQ9GZX7 198 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 RASSF1Q9NS23 344 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 PNMA8BQ9ULN7 279 aaPredicted RBP20.45■□□□□ 0.86
CLN6-224ENST00000638076 TPRKBQ9Y3C4 175 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 HEATR5BQ9P2D3 2071 aa20.45■□□□□ 0.86
CLN6-224ENST00000638076 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.44■□□□□ 0.86
CLN6-224ENST00000638076 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.44■□□□□ 0.86
CLN6-224ENST00000638076 A0A1W2PQF6 199 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 LRIT2A6NDA9 550 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 KCNJ13O60928 360 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 HOXB2P14652 356 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 DDX5P17844 614 aaKnown RBP20.44■□□□□ 0.86
CLN6-224ENST00000638076 BCL6P41182 706 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 SSR2P43308 183 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 STT3AP46977 705 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 CXCR4P61073 352 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 PPP2CBP62714 309 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 PPP2CAP67775 309 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 SMN1Q16637 294 aaKnown RBP20.44■□□□□ 0.86
CLN6-224ENST00000638076 ARMC8Q8IUR7 673 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 OR4C15Q8NGM1 316 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 UBE2FQ969M7 185 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 KCNC2Q96PR1 638 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 MVB12BQ9H7P6 319 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 SIRT3Q9NTG7 399 aaPredicted RBP20.44■□□□□ 0.86
CLN6-224ENST00000638076 SCN3BQ9NY72 215 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 ERVK-18Q9QC07 812 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 WARS2Q9UGM6 360 aaKnown RBP20.44■□□□□ 0.86
CLN6-224ENST00000638076 A0A0A6YYD5 115 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 TRBC2A0A5B9 178 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 ITIH1P19827 911 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 CCNA2P20248 432 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 CALRP27797 417 aaKnown RBP20.44■□□□□ 0.86
CLN6-224ENST00000638076 GSTM5P46439 218 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 SLC35A2P78381 396 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 EMX1Q04741 257 aaPredicted RBP20.44■□□□□ 0.86
CLN6-224ENST00000638076 EXOC3L2Q2M3D2 409 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 SPDYE7PQ495Y7 208 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 RPS26P11Q5JNZ5 115 aaPredicted RBP20.44■□□□□ 0.86
CLN6-224ENST00000638076 GPR153Q6NV75 609 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 C6orf120Q7Z4R8 191 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 SLC5A8Q8N695 610 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 TTLQ8NG68 377 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 RAB2BQ8WUD1 216 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 ZBED6CLQ96FA7 236 aaPredicted RBP20.44■□□□□ 0.86
CLN6-224ENST00000638076 MACROD1Q9BQ69 325 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 FGF22Q9HCT0 170 aa20.44■□□□□ 0.86
CLN6-224ENST00000638076 SCHIP1Q9P0W5 487 aaPredicted RBP20.44■□□□□ 0.86
CLN6-224ENST00000638076 E9PQ18 207 aa20.43■□□□□ 0.86
CLN6-224ENST00000638076 SH3BP5O60239 455 aa20.43■□□□□ 0.86
CLN6-224ENST00000638076 B4GALT2O60909 372 aa20.43■□□□□ 0.86
CLN6-224ENST00000638076 INMTO95050 263 aa20.43■□□□□ 0.86
CLN6-224ENST00000638076 BCHEP06276 602 aa20.43■□□□□ 0.86
CLN6-224ENST00000638076 HOXB3P14651 431 aaPredicted RBP20.43■□□□□ 0.86
CLN6-224ENST00000638076 GRK3P35626 688 aa20.43■□□□□ 0.86
CLN6-224ENST00000638076 RPE65Q16518 533 aa20.43■□□□□ 0.86
CLN6-224ENST00000638076 DUSP7Q16829 419 aa20.43■□□□□ 0.86
CLN6-224ENST00000638076 ZNF793Q6ZN11 406 aa20.43■□□□□ 0.86
CLN6-224ENST00000638076 SLC38A5Q8WUX1 472 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms