RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MAFAQ8NHW3 353 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 JPH3Q8WXH2 748 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 NXNL1Q96CM4 212 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 C1orf21Q9H246 121 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 CHRAC1Q9NRG0 131 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 GABRQQ9UN88 632 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 PROM1O43490 865 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 PCBD1P61457 104 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 TLE3Q04726 772 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 MPP2Q14168 576 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 SPATA22Q8NHS9 363 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 THAP6Q8TBB0 222 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 SHKBP1Q8TBC3 707 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 ST7LQ8TDW4 575 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF700Q9H0M5 742 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 RNF39Q9H2S5 420 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 B3GNT2Q9NY97 397 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 BCL9LQ86UU0 1499 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 ABCC6O95255 1503 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 VGLL3A8MV65 326 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 UNC5CO95185 931 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 TBX18O95935 607 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 CCL11P51671 97 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 NOMO1Q15155 1222 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 Q6ZSR6 202 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 RSC1A1Q92681 617 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 DGCR14Q96DF8 476 aaKnown RBP5.9□□□□□ -1.47
SCN1A-217ENST00000637988 CENPNQ96H22 339 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-217ENST00000637988 HSD17B14Q9BPX1 270 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM168Q9H0V1 697 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 RBPJLQ9UBG7 517 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 SCP2D1Q9UJQ7 156 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 DHDHQ9UQ10 334 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 TP53TG5Q9Y2B4 290 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM14AQ9Y6G1 99 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 PHYHO14832 338 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 CD38P28907 300 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 PRKCIP41743 596 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 RORCP51449 518 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 HERVK_113P63132 956 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 TRAM1Q15629 374 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 BCL2A1Q16548 175 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 SIRPB2Q5JXA9 342 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 ERVK-6Q9BXR3 956 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF442Q9H7R0 627 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF358Q9NW07 568 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 TAS2R1Q9NYW7 299 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 NUFIP1Q9UHK0 495 aaKnown RBP5.9□□□□□ -1.47
SCN1A-217ENST00000637988 KLHL21Q9UJP4 597 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 FZD4Q9ULV1 537 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 NAALAD2Q9Y3Q0 740 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 ALG5Q9Y673 324 aa5.9□□□□□ -1.47
SCN1A-217ENST00000637988 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 PDLIM1O00151 329 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 PORP16435 677 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 SLAMF1Q13291 335 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 C1orf61Q13536 156 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 UBAP2LQ14157 1087 aaKnown RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 CRTC2Q53ET0 693 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 SH3D19Q5HYK7 790 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ATAD3CQ5T2N8 411 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 CLEC20AQ6ZU45 233 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 PLD5Q8N7P1 536 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 CHPT1Q8WUD6 406 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 OR5B2Q96R09 309 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 TBX5Q99593 518 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ACTR3BQ9P1U1 418 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 SLC6A14Q9UN76 642 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 FARSAQ9Y285 508 aaKnown RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 A0A1B0GVT2 93 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 RCCD1A6NED2 376 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ENO4A6NNW6 628 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 IFNA5P01569 189 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 STATHP02808 62 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 RGS19P49795 217 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 TPTEP56180 551 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 LSM3P62310 102 aaKnown RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ARL16Q0P5N6 197 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 TPRG1LQ5T0D9 272 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 MON1BQ7L1V2 547 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 GID4Q8IVV7 300 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 UBALD2Q8IYN6 164 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 Q8N402 240 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 NSMAFQ92636 917 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 TOE1Q96GM8 510 aaKnown RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 EGLN1Q9GZT9 426 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 TVP23BQ9NYZ1 205 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 C2orf92A0A1B0GVN3 265 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ARGFXA6NJG6 315 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 SHISA7A6NL88 538 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 UBOX5O94941 541 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 GJB5O95377 273 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 NMBRP28336 390 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 MAGEA12P43365 314 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 SERINC3Q13530 473 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 IL10RAQ13651 578 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 GANABQ14697 944 aaKnown RBP5.89□□□□□ -1.47
SCN1A-217ENST00000637988 GLT8D1Q68CQ7 371 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 PLEKHG7Q6ZR37 379 aa5.89□□□□□ -1.47
SCN1A-217ENST00000637988 ZDHHC21Q8IVQ6 265 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms